@22:51:30.29PDT30-Jul-18
>BREAK< ESP3 Gateway v0.99 for core bus @22:51:30.32 >BREAK< ESP3 Gateway v0.99 for cartridge bus @22:51:31.92 Configuration for honu by brent@mbari.org /home/esp/esp2/type/auv/honu/configure.rb @22:51:33.34 Polling Can every 5:00 @22:51:33.67 Clients may connect on TCP port 9999 @22:51:33.68 Connecting to 10.89.5.2:9999 @22:51:33.73 Waiting for espclients... @22:51:33.95 Session Begun @22:51:35.89 -> showStatus @22:51:37.88 -> Cmd.loadCartridge @22:51:38.04 Gate.power :main,:ON,limit to 5000mA @22:51:38.06 Gate.power :analytic1,:ON,limit to 5000mA @22:51:38.09 Gate.power :analytic2,:ON,limit to 5000mA @22:51:38.12 Gate.power :analytic3,:ON,limit to 5000mA @22:51:38.31 Powering core bus @22:51:40.57 SPR Module 1, FW Rev. B, FPGA Rev. C @22:51:40.76 ArS.configure ArSconfig @22:51:40.91 LyS1.configure LyS1config @22:51:41.08 LyS2.configure LyS2config @22:51:41.21 AirS.configure AirSconfig @22:51:41.38 TV.configure TVconfig @22:51:41.54 SP.configure SPconfig @22:51:41.70 SC.configure SCconfig @22:51:41.86 PV.configure PVconfig @22:51:42.02 PinPort.configure PPconfig @22:51:42.17 Sea.configure SPconfig @22:51:42.26 All elf controllers running firmware version 4.46 @22:51:42.29 Gate.power :motor,:ON,limit to 5000mA @22:51:42.68 ArS.reconfigure ArSconfig @22:51:43.03 PV.reconfigure PVconfig @22:51:43.07 TV.reconfigure TVconfig @22:51:43.11 AirS.reconfigure AirSconfig @22:51:43.15 ArS.home.jog 0 @22:51:43.20 LyS2.reconfigure LyS2config @22:51:43.25 PinPort.reconfigure PPconfig @22:51:43.30 LyS1.reconfigure LyS1config @22:51:43.60 PV.home.jog 0 @22:51:43.64 AirS.home.jog 0 @22:51:43.68 TV.home.jog 0 @22:51:43.72 LyS2.home.jog 0 @22:51:43.76 PinPort.home.jog 0 @22:51:43.84 LyS1.home.jog 0 @22:51:44.77 PinPort.reconfigure HomePP @22:51:44.80 PV.reconfigure HomePV @22:51:44.84 AirS.reconfigure HomeMagSyringe @22:51:44.89 LyS2.reconfigure HomeSyringe @22:51:44.94 ArS.reconfigure HomeMagSyringe @22:51:44.99 TV.reconfigure HomeTV @22:51:45.04 LyS1.reconfigure HomeSyringe @22:51:45.33 PinPort.jog -110 @22:51:45.38 PV.jog -241 @22:51:45.44 AirS.jog -299 @22:51:45.50 LyS2.jog -266 @22:51:45.59 TV.jog -541 @22:51:45.63 LyS1.jog -272 @22:51:45.67 ArS.jog -269 @22:51:46.01 PinPort.setRawPosition! 0 @22:51:46.07 PinPort.seek :home @22:51:46.19 PinPort.reconfigure PPconfig @22:51:46.30 PV.setRawPosition! -50 @22:51:46.37 PV.seek :home @22:51:46.54 AirS.setRawPosition! -50 @22:51:46.56 LyS2.setRawPosition! -50 @22:51:46.91 LyS1.setRawPosition! -50 @22:51:46.94 ArS.setRawPosition! -50 @22:51:47.10 AirS.seek :home @22:51:47.17 LyS2.seek :home @22:51:47.22 LyS1.seek :home @22:51:47.27 ArS.seek :home @22:51:47.62 PV.reconfigure PVconfig @22:51:47.65 AirS.reconfigure AirSconfig @22:51:47.89 LyS2.reconfigure LyS2config @22:51:47.94 LyS1.reconfigure LyS1config @22:51:47.98 TV.setRawPosition! 0 @22:51:48.03 ArS.reconfigure ArSconfig @22:51:48.24 TV.seek :home @22:51:48.37 TV.reconfigure TVconfig @22:51:48.73 TV.seek :clear @22:51:50.37 TV.coast @22:51:50.44 SC.reconfigure HomeSC @22:51:50.52 SC.home.jog 0 @22:51:51.33 SC.reconfigure SCconfig @22:51:51.40 SC.seek 40 @22:51:51.53 Selecting Cartridge 50 @22:51:51.95 SC.seek 50 @22:51:54.35 LyS2.seek :locked @22:51:54.55 PV.seek :locked @22:51:54.72 AirS.seek :locked @22:51:58.83 Powering cartridge bus @22:52:00.98 Gate.setIR 1750,5000,0,6 @22:52:01.11 Gate.setIR 0,5000,0,6 @22:52:01.19 Loaded Lyse-n-Go Cartridge @22:52:01.20 PuckHeater.configure HeatConfig @22:52:01.27 Gate.power :heat,:ON,limit to 5000mA @22:52:16.62 -> Cmd.startFiltering @22:52:16.95 Duration of filtering limited to 1:05:00 @22:52:17.28 Priming sample loop w/100ml, bypass w/10ml @22:52:17.39 SP.setPosition! 0ml @22:52:17.45 Intake.open @22:52:17.48 Exhaust.open @22:52:18.39 Sea @-42.9psia @22:52:18.41 Waiting 4 - 300s for filter pressure to stabilize +/-0.5psi @22:52:24.16 Vacuum tare is 21% of full scale @22:52:24.19 PB.open @22:52:24.23 Exhaust.close @22:52:25.10 Sea @-42.9psia @22:52:25.21 SP.reconfigure SPprime @22:52:25.62 SP.seek 10ml,1:21 @22:52:36.52 SP.setPosition! 0ml @22:52:36.59 PB.close @22:52:36.63 Exhaust.open @22:52:37.48 Sea @-42.9psia @22:52:37.60 SP.reconfigure SPprime @22:52:37.68 SP.seek 100ml,8:51 @22:54:24.40 Pressurizing cartridge to 26psi @22:54:24.42 Intake.close @22:54:25.19 SP.setPosition! 0ml @22:54:25.25 PB.open @22:54:26.08 TV.seek :crack @22:54:26.90 TV.seek :clear @22:54:27.72 Intake.open @22:54:29.19 PB.close @22:54:29.93 Exhaust.close @22:54:30.75 Sea @-42.9psia @22:54:30.86 SP.reconfigure SPcharge @22:54:30.95 SP.seek 7.5ml,1:08 @22:54:45.97 Cartridge pressurized with 1.056ml to 26.3psi @22:54:46.40 delay 3 seconds @22:54:49.49 Cartridge at 23.1psi 3 seconds later @22:54:49.60 TV.seek :cartridge @22:54:51.45 TV.seek :clear @22:54:53.28 Sampling 1000.0ml @22:54:53.30 SP.setPosition! 0ml @22:54:53.37 Exhaust.open @22:54:54.20 Sea @-42.9psia @22:54:54.32 SP.reconfigure SPsample @22:54:54.40 SP.seek 1000ml,1:23:53 @22:54:55.36 Cartridge 50 sampling 0/1000ml at 0.16ml/s with 4.1psi vacuum @22:55:55.36 Cartridge 50 sampling 34/1000ml at 0.58ml/s with 16.7psi vacuum @22:56:55.36 Cartridge 50 sampling 68/1000ml at 0.54ml/s with 22.2psi vacuum @22:57:55.36 Cartridge 50 sampling 102/1000ml at 0.56ml/s with 20.6psi vacuum @22:58:55.36 Cartridge 50 sampling 135/1000ml at 0.57ml/s with 24.2psi vacuum @22:59:55.36 Cartridge 50 sampling 168/1000ml at 0.57ml/s with 25.8psi vacuum @23:00:55.36 Cartridge 50 sampling 202/1000ml at 0.57ml/s with 26.4psi vacuum @23:01:55.36 Cartridge 50 sampling 236/1000ml at 0.59ml/s with 25.3psi vacuum @23:02:55.36 Cartridge 50 sampling 271/1000ml at 0.59ml/s with 25.5psi vacuum @23:03:55.36 Cartridge 50 sampling 306/1000ml at 0.59ml/s with 22.1psi vacuum @23:04:55.36 Cartridge 50 sampling 342/1000ml at 0.59ml/s with 15.6psi vacuum @23:05:55.36 Cartridge 50 sampling 377/1000ml at 0.59ml/s with 14.3psi vacuum @23:06:55.36 Cartridge 50 sampling 412/1000ml at 0.57ml/s with 18.9psi vacuum @23:07:55.37 Cartridge 50 sampling 447/1000ml at 0.57ml/s with 14.0psi vacuum @23:08:55.36 Cartridge 50 sampling 482/1000ml at 0.57ml/s with 27.8psi vacuum @23:09:55.36 Cartridge 50 sampling 517/1000ml at 0.57ml/s with 27.9psi vacuum @23:10:55.36 Cartridge 50 sampling 552/1000ml at 0.57ml/s with 14.1psi vacuum @23:11:55.37 Cartridge 50 sampling 587/1000ml at 0.60ml/s with 24.5psi vacuum @23:12:55.36 Cartridge 50 sampling 622/1000ml at 0.57ml/s with 20.7psi vacuum @23:13:55.69 Cartridge 50 sampling 656/1000ml at 0.58ml/s with 23.6psi vacuum @23:14:55.36 Cartridge 50 sampling 690/1000ml at 0.58ml/s with 21.9psi vacuum @23:15:55.36 Cartridge 50 sampling 724/1000ml at 0.56ml/s with 24.7psi vacuum @23:16:55.37 Cartridge 50 sampling 758/1000ml at 0.54ml/s with 15.9psi vacuum @23:17:55.36 Cartridge 50 sampling 791/1000ml at 0.56ml/s with 23.3psi vacuum @23:18:55.36 Cartridge 50 sampling 825/1000ml at 0.56ml/s with 18.0psi vacuum @23:19:55.36 Cartridge 50 sampling 858/1000ml at 0.52ml/s with 14.4psi vacuum @23:20:55.36 Cartridge 50 sampling 891/1000ml at 0.56ml/s with 26.2psi vacuum @23:21:55.37 Cartridge 50 sampling 923/1000ml at 0.54ml/s with 24.4psi vacuum @23:22:55.36 Cartridge 50 sampling 955/1000ml at 0.53ml/s with 24.6psi vacuum @23:23:55.36 Cartridge 50 sampling 987/1000ml at 0.54ml/s with 25.1psi vacuum @23:24:25.30 Intake.close @23:24:25.35 Exhaust.close @23:24:26.19 Sampled 1000.0ml @23:24:26.30 TV.seek :bypass @23:24:27.94 TV.seek :clear @23:24:30.09 -> Cmd.startProcessing @23:24:31.97 SPR.command "read_sequences" @23:24:32.52 SPR.command "stats_on" @23:24:32.57 SPR.command "start 2 0" @23:24:34.58 Begun log /var/log/esp/spr18jul3023h.spr @23:24:35.38 Handoff.select :waste @23:24:35.53 ArS.seek empty @23:24:53.26 PinPort.seek :cartridge @23:24:59.00 LyS1.seek 1350ul @23:25:04.96 PV.seek :reagent @23:25:05.82 AirS.seek :tVent @23:25:07.90 delay 2 seconds @23:25:09.93 AirS.reconfigure EvacAirS @23:25:10.03 AirS.seek :evac @23:25:32.35 delay 15 seconds @23:25:47.38 AirS.reconfigure AirSconfig @23:25:47.45 AirS.seek :tVent @23:26:01.68 delay 2 seconds @23:26:03.72 AirS.reconfigure EvacAirS @23:26:03.78 AirS.seek :evac @23:26:26.12 delay 15 seconds @23:26:41.16 AirS.reconfigure AirSconfig @23:26:41.23 AirS.seek :tVent @23:26:55.46 delay 2 seconds @23:26:57.49 AirS.reconfigure EvacAirS @23:26:57.56 AirS.seek :evac @23:27:19.88 delay 15 seconds @23:27:34.91 AirS.reconfigure AirSconfig @23:27:34.98 AirS.seek :tVent @23:27:49.20 delay 2 seconds @23:27:51.24 AirS.reconfigure EvacAirS @23:27:51.31 AirS.seek :evac @23:28:13.60 delay 15 seconds @23:28:28.64 AirS.reconfigure AirSconfig @23:28:28.71 AirS.seek :tVent @23:28:42.93 delay 2 seconds @23:28:44.97 AirS.reconfigure EvacAirS @23:28:45.03 AirS.seek :evac @23:29:07.34 delay 15 seconds @23:29:22.37 delay 1:30 @23:30:52.41 AirS.reconfigure AirSconfig @23:30:52.47 AirS.seek :fVent @23:30:53.94 delay 15 seconds @23:31:08.97 LyS1.reconfigure SlowLyS1 @23:31:09.10 LyS1.seek 1050ul @23:31:39.13 delay 5 seconds @23:31:44.16 Handoff.select :blocked @23:31:44.39 LyS1.seek 450ul @23:32:44.36 delay 10 seconds @23:32:54.39 AirS.reconfigure SlowAirS @23:32:54.53 AirS.reconfigure to mix into 1.37806 parts LyS1 @23:32:55.06 AirS.seek evac @23:32:55.12 LyS1.seek 300ul @23:33:10.28 AirS.reconfigure AirSconfig @23:33:10.37 AirS.seek :full @23:33:24.63 LyS1.seek :empty @23:33:54.73 PuckHeater.seek 84.1C @23:34:55.71 PuckHeater.hold 15:00,84.1C @23:49:50.15 LyS1.reconfigure LyS1config @23:49:50.24 LyS1.seek 900ul @23:49:58.59 AirS.seek :tVent @23:49:58.74 delay 2 seconds @23:50:00.78 AirS.reconfigure HalfSpeedAirS @23:50:00.85 AirS.seek :evac @23:50:28.60 delay 15 seconds @23:50:43.64 AirS.reconfigure AirSconfig @23:50:43.71 AirS.seek :tVent @23:50:58.02 delay 2 seconds @23:51:00.05 AirS.reconfigure HalfSpeedAirS @23:51:00.13 AirS.seek :evac @23:51:27.89 delay 15 seconds @23:51:42.93 AirS.reconfigure AirSconfig @23:51:43.00 AirS.seek :tVent @23:51:57.22 delay 2 seconds @23:51:59.26 AirS.reconfigure HalfSpeedAirS @23:51:59.33 AirS.seek :evac @23:52:27.08 delay 15 seconds @23:52:42.11 delay 1:00 @23:53:42.14 Handoff.select :waste @23:53:42.27 delay 15 seconds @23:53:57.31 AirS.seek :fVent @23:53:59.52 delay 10 seconds @23:54:09.55 AirS.reconfigure AirSconfig @23:54:09.63 AirS.seek :evac @23:54:11.09 Lysis Recovered in LyS1 @23:54:11.10 Lysis Complete @23:54:11.13 Handoff.select :waste @23:54:11.19 LyS2.seek :full @23:54:11.29 LyS1.reconfigure DAmixLyS1 @23:54:11.36 LyS2.reconfigure DAmixLyS2 @23:54:11.87 LyS1.seek 650ul @23:54:11.95 LyS2.seek 1480ul @23:54:59.27 delay 5 seconds @23:55:04.30 Handoff.select :SPR @23:55:04.43 SPR.command "start 1 14" @23:55:05.55 Running Experiment-Rep #1 @23:55:05.56 delay 10 seconds @23:55:15.59 SPR.command "start 1 0" @23:55:18.91 Waiting up to 4:00 for SPR to enter state 1 @23:57:23.19 SPR.command "hold_on" @23:57:25.00 LyS1.seek 300ul @23:57:25.05 LyS2.seek 1130ul @23:58:31.26 delay 15 seconds @23:58:46.30 SPR.command "hold_off" @23:58:48.88 Waiting up to 25:00 for SPR to enter state 7 @00:18:53.29PDT31-Jul-18 Handoff.select :waste @00:18:53.43 LyS1.reconfigure LyS1config @00:18:53.51 LyS2.reconfigure LyS2config @00:18:53.58 Rep #1 SPR Analysis has Completed @00:18:54.22 Ended log /var/log/esp/spr18jul3023h.spr @00:18:54.56 SPR.command "stats_off" @00:18:56.32 -> Cmd.stop @00:18:56.44 Handoff.select :close @00:18:56.67 Gate.power :heat,:OFF @00:18:56.70 Gate.power :cartridge,:OFF @00:18:56.74 PV.seek :locked @00:18:57.76 ArS.seek :clear @00:18:57.94 LyS1.seek :clear @00:18:58.13 LyS2.seek :clear @00:18:58.31 AirS.seek :clear @00:18:58.54 PinPort.seek :clear @00:18:59.50 Slide::Error in LRAUV -- Pin Handoff Port positionErr at cartridge - 208 counts (actually cartridge - 67 counts) @00:18:59.52 ArS.coast @00:18:59.60 LyS1.coast @00:18:59.68 LyS2.coast @00:18:59.75 AirS.coast @00:18:59.82 TV.coast @00:18:59.89 SP.coast @00:18:59.96 SC.coast @00:19:00.03 PV.coast @00:19:00.09 PinPort.coast @00:19:00.32 Gate.power :motor,:OFF @00:19:00.34 Gate.power :main,:OFF @00:19:00.37 Gate.power :core,:OFF @00:19:00.40 Gate.power :analytic1,:OFF @00:19:00.43 Gate.power :analytic2,:OFF @00:19:00.46 Gate.power :analytic3,:OFF @00:19:00.49 ready to power off