@17:23:05.61PDT15-Jul-19
>BREAK< ESP3 Gateway v0.99 for core bus @17:23:05.66 >BREAK< ESP3 Gateway v0.99 for cartridge bus @17:23:07.91 Configuration for honu by brent@mbari.org 4/4/19 /home/esp/esp2/type/auv/honu/configure.rb @17:23:11.73 Polling Can every 5:00 @17:23:11.84 Gate.power :analytic1,:ON,limit to 5000mA @17:23:11.85 Gate.power :analytic2,:ON,limit to 5000mA @17:23:11.87 Gate.power :analytic3,:ON,limit to 5000mA @17:23:12.57 Archive.configure :default @17:23:12.73 Air.configure :default @17:23:12.85 Lysis1.configure :default @17:23:12.97 Lysis2.configure :default @17:23:13.13 Plunge.configure :default @17:23:13.22 SPR Module 1, FW Rev. B, FPGA Rev. C @17:23:13.33
SamplePump.configure :default @17:23:13.48 ExtraPump.configure :default @17:23:13.62 Toroid.configure :default @17:23:13.77 Carousel.reconfigure :default @17:23:13.82 Carousel.hold @17:23:13.89 Carousel.configure :default @17:23:14.03 Pressure.configure :default @17:23:14.16 PinPort.configure :default @17:23:14.22 All elf controllers running firmware version 4.58 @17:23:14.32 Intake.close @17:23:14.41 Exhaust.close @17:23:14.48 Bypass.close @17:23:14.68
Loading /home/esp/esp2/mission/processAll.rb mission @17:23:14.72 Processing dry cartridges: [23, 24, 25, 26, 27, 28, 29] @17:23:14.73 Sampling default goal volume per cartridge type loaded @17:23:14.75 Fixing samples for 10:00, evacuating once @17:23:14.77 delay 30 seconds @17:23:20.03 Session Begun @17:23:23.95 -> showlog @17:23:45.58
Carousel.seek 29 @17:23:45.77 Selecting Cartridge 29 @17:23:46.11 Carousel.seek 29 @17:23:46.38 Lysis1.seek :locked @17:23:50.58 Plunge.seek :locked @17:23:50.77 Air.seek :locked @17:23:54.97
Powering cartridge bus @17:23:57.12 Gate.setIR 1750,5000,0,6 @17:23:57.25 Gate.setIR 0,5000,0,6 @17:23:57.33 Loaded Lyse-n-Go Cartridge @17:23:57.34 PuckHeater.configure HeatConfig @17:23:57.44 Gate.power :heat,:ON,limit to 5000mA @17:23:57.80 Duration of filtering limited to 2:05:00 @17:23:58.19 Priming sample loop w/100ml, bypass w/10ml @17:23:58.20 SamplePump.setPosition! 0ml @17:23:58.28 Bypass.open @17:23:59.84 Intake.open @17:24:00.25 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @17:24:03.28 Vacuum tare is 51% of full scale @17:24:03.49 Pressure.reconfigure :default @17:24:03.58 Pressure.hold @17:24:03.84 SamplePump.reconfigure :prime @17:24:03.99 SamplePump.seek 10ml,1:10 @17:24:13.02 Pressure.coast @17:24:13.11 SamplePump.setPosition! 0ml @17:24:13.18 Exhaust.open @17:24:14.66 Bypass.close @17:24:16.27 Pressure.reconfigure :default @17:24:16.36 Pressure.hold @17:24:16.70 SamplePump.reconfigure :prime @17:24:16.81 SamplePump.seek 100ml,7:10 @17:26:03.59 Pressure.coast @17:26:03.69 Bypass.open @17:26:04.45 Intake.close @17:26:05.34 Toroid.reconfigure :hold @17:26:05.46 Toroid.seek :crack @17:26:06.29 Toroid.reconfigure :default @17:26:06.39 Toroid.seek :clear @17:26:08.04 Toroid.reconfigure :hold @17:26:08.15 Toroid.seek :cartridge @17:26:10.00 Toroid.reconfigure :default @17:26:10.11 Toroid.seek :clear @17:26:12.19 Pressurizing cartridge to 14psi above 14.4psia @17:26:12.20 SamplePump.setPosition! 0ml @17:26:12.30 Intake.open @17:26:12.68 Bypass.close @17:26:13.46 Exhaust.close @17:26:14.37 Pressure.reconfigure :default @17:26:14.96 Pressure.hold @17:26:15.24 SamplePump.reconfigure :charge @17:26:15.36 SamplePump.seek 2.3ml,41 seconds @17:26:23.89 Pressure.coast @17:26:23.98 Intake.close @17:26:24.80 Pressurized cartridge with 0.336ml to 14.1psi @17:26:24.82 Isolated @28.4psia (14.0psi) @17:26:24.84 Checking for cartridge leaks from 28.4psia @17:26:24.90 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @17:26:30.24 Cartridge pressure fell 1% to 28.2psia @17:26:30.37 Sampling 1000.0ml @17:26:30.39 SamplePump.setPosition! 0ml @17:26:30.48 Exhaust.open @17:26:31.21 Intake.open @17:26:31.64 Pressure.reconfigure :default @17:26:31.74 Pressure.hold @17:26:32.08 SamplePump.reconfigure :sample @17:26:32.19 SamplePump.seek 1000ml,1:07:09 @17:26:34.72 Cartridge 29 sampling 1/1000ml at 0.42ml/s with 12.8psi vacuum 1.7m deep (17.2psia) @17:27:34.72 Cartridge 29 sampling 27/1000ml at 0.42ml/s with 13.0psi vacuum @17:28:34.72 Cartridge 29 sampling 52/1000ml at 0.44ml/s with 15.8psi vacuum @17:29:34.72 Cartridge 29 sampling 78/1000ml at 0.41ml/s with 13.3psi vacuum @17:30:34.73 Cartridge 29 sampling 103/1000ml at 0.40ml/s with 11.8psi vacuum 2.2m deep (17.9psia) @17:31:34.73 Cartridge 29 sampling 128/1000ml at 0.43ml/s with 9.6psi vacuum 3.1m deep (19.3psia) @17:32:34.73 Cartridge 29 sampling 153/1000ml at 0.44ml/s with 9.7psi vacuum 3.4m deep (19.8psia) @17:33:34.71 Cartridge 29 sampling 179/1000ml at 0.43ml/s with 15.4psi vacuum 1.7m deep (17.2psia) @17:34:34.71 Cartridge 29 sampling 206/1000ml at 0.45ml/s with 12.9psi vacuum 3.0m deep (19.2psia) @17:35:34.73 Cartridge 29 sampling 231/1000ml at 0.45ml/s with 13.6psi vacuum 3.0m deep (19.1psia) @17:36:34.72 Cartridge 29 sampling 257/1000ml at 0.42ml/s with 11.7psi vacuum @17:37:34.72 Cartridge 29 sampling 282/1000ml at 0.41ml/s with 15.7psi vacuum @17:38:34.71 Cartridge 29 sampling 307/1000ml at 0.37ml/s with 15.6psi vacuum @17:39:34.72 Cartridge 29 sampling 331/1000ml at 0.38ml/s with 7.5psi vacuum 3.2m deep (19.5psia) @17:40:34.71 Cartridge 29 sampling 355/1000ml at 0.41ml/s with 10.5psi vacuum 2.4m deep (18.2psia) @17:41:34.73 Cartridge 29 sampling 379/1000ml at 0.40ml/s with 13.5psi vacuum 1.8m deep (17.4psia) @17:42:34.73 Cartridge 29 sampling 403/1000ml at 0.38ml/s with 9.2psi vacuum 2.3m deep (18.2psia) @17:43:34.71 Cartridge 29 sampling 427/1000ml at 0.40ml/s with 14.2psi vacuum @17:44:34.72 Cartridge 29 sampling 450/1000ml at 0.36ml/s with 7.5psi vacuum 3.2m deep (19.4psia) @17:45:34.72 Cartridge 29 sampling 473/1000ml at 0.42ml/s with 10.8psi vacuum 3.6m deep (20.1psia) @17:46:34.73 Cartridge 29 sampling 497/1000ml at 0.38ml/s with 14.4psi vacuum @17:47:34.73 Cartridge 29 sampling 519/1000ml at 0.41ml/s with 14.8psi vacuum @17:48:34.71 Cartridge 29 sampling 542/1000ml at 0.40ml/s with 10.7psi vacuum 3.5m deep (19.9psia) @17:49:34.72 Cartridge 29 sampling 564/1000ml at 0.34ml/s with 17.4psi vacuum @17:50:34.73 Cartridge 29 sampling 586/1000ml at 0.36ml/s with 9.9psi vacuum 3.2m deep (19.4psia) @17:51:34.73 Cartridge 29 sampling 607/1000ml at 0.34ml/s with 18.0psi vacuum @17:52:34.72 Cartridge 29 sampling 628/1000ml at 0.39ml/s with 11.5psi vacuum 4.1m deep (20.8psia) @17:53:34.71 Cartridge 29 sampling 649/1000ml at 0.35ml/s with 13.8psi vacuum @17:54:34.72 Cartridge 29 sampling 670/1000ml at 0.37ml/s with 11.3psi vacuum 3.6m deep (20.0psia) @17:55:34.72 Cartridge 29 sampling 690/1000ml at 0.35ml/s with 12.1psi vacuum 4.1m deep (20.8psia) @17:56:34.73 Cartridge 29 sampling 710/1000ml at 0.29ml/s with 17.0psi vacuum @17:57:34.71 Cartridge 29 sampling 730/1000ml at 0.32ml/s with 9.5psi vacuum 2.6m deep (18.5psia) @17:58:34.72 Cartridge 29 sampling 749/1000ml at 0.28ml/s with 14.6psi vacuum @17:59:34.73 Cartridge 29 sampling 768/1000ml at 0.32ml/s with 9.7psi vacuum 3.2m deep (19.5psia) @18:00:34.73 Cartridge 29 sampling 787/1000ml at 0.35ml/s with 14.4psi vacuum 3.5m deep (19.8psia) @18:01:34.73 Cartridge 29 sampling 806/1000ml at 0.32ml/s with 8.6psi vacuum 3.5m deep (19.9psia) @18:02:34.72 Cartridge 29 sampling 824/1000ml at 0.27ml/s with 5.4psi vacuum 4.2m deep (20.8psia) @18:03:34.72 Cartridge 29 sampling 842/1000ml at 0.32ml/s with 10.5psi vacuum 3.4m deep (19.7psia) @18:04:34.73 Cartridge 29 sampling 860/1000ml at 0.30ml/s with 9.0psi vacuum 3.2m deep (19.4psia) @18:05:34.72 Cartridge 29 sampling 878/1000ml at 0.31ml/s with 14.4psi vacuum 3.1m deep (19.3psia) @18:06:34.72 Cartridge 29 sampling 895/1000ml at 0.29ml/s with 10.2psi vacuum 4.6m deep (21.5psia) @18:07:34.72 Cartridge 29 sampling 913/1000ml at 0.28ml/s with 15.9psi vacuum @18:08:34.72 Cartridge 29 sampling 929/1000ml at 0.26ml/s with 15.9psi vacuum @18:09:34.73 Cartridge 29 sampling 946/1000ml at 0.30ml/s with 10.1psi vacuum 3.3m deep (19.6psia) @18:10:34.72 Cartridge 29 sampling 962/1000ml at 0.27ml/s with 15.5psi vacuum 2.0m deep (17.7psia) @18:11:34.73 Cartridge 29 sampling 978/1000ml at 0.25ml/s with 16.9psi vacuum @18:12:34.72 Cartridge 29 sampling 994/1000ml at 0.26ml/s with 17.6psi vacuum @18:12:56.19 Pressure.coast @18:12:56.39 Intake.close @18:12:56.43 Exhaust.close @18:12:56.71 Toroid.reconfigure :hold @18:12:56.83 Toroid.seek :bypass @18:12:58.98 Toroid.reconfigure :default @18:12:59.12 Toroid.seek :clear @18:13:00.80 Sampled 1000.0ml @18:13:02.90 SPR.command "read_sequences" @18:13:02.97 SPR.command "stats_on" @18:13:03.02 SPR.command "start 0 1" @18:13:05.03 Begun log /var/log/esp/spr19jul1518h.spr @18:13:06.10 AnalyticModule::ReadTimeout in PROCESSING -- No response from SPR on AMspr (try 1 of 3) @18:13:07.63 Handoff.select :waste @18:13:07.88 Archive.seek :empty @18:13:15.46 Syringe tare is 19% of full scale @18:13:25.64 PinPort.seek :cartridge @18:13:30.24 Lysis1.seek 1350ul @18:13:32.77 Lysis2.seek 1700ul @18:13:35.91 Plunge.seek :reagent @18:13:36.79 Evacuating puck with filter bubble point of 30psi @18:13:36.81 PinPort.seek :cartridge @18:13:36.96 Handoff.select :waste @18:13:44.70 Air pumping 1 strokes to reach 4psi @18:13:44.74 Air.reconfigure :gulp @18:13:44.86 Air.seek :tVent @18:13:46.71 0.3psi after gulp @18:13:46.73 Air stroke #1 of 1 @18:13:46.77 Air.reconfigure :pressurize @18:13:46.91 Air.seek :pressurized @18:13:59.79 0.3psi after pressurize @18:13:59.82 Air.reconfigure :compress @18:13:59.95 Air.seek :evac @18:14:02.67 0.5psi after compress @18:14:17.33 0.2psi after compress (stable) @18:14:17.53 at 0.2psi Opened to waste @18:14:17.54 Handoff.select :blocked @18:14:17.80 Air pumping 10 strokes to reach 30psi @18:14:17.83 Air.reconfigure :gulp @18:14:17.94 Air.seek :tVent @18:14:27.89 3.8psi after gulp @18:14:27.91 Air stroke #1 of 10 @18:14:27.96 Air.reconfigure :pressurize @18:14:28.07 Air.seek :pressurized @18:14:40.97 6.0psi after pressurize @18:14:41.03 Air.reconfigure :compress @18:14:41.13 Air.seek :evac @18:14:43.85 6.6psi after compress @18:15:12.13 Reached 30.1 of 30.0psi after pumping 3115ul (2.00 strokes) @18:15:12.14 Handoff.select :waste @18:15:20.51 delay 1:00 @18:16:20.54 Handoff.select :blocked @18:16:38.23 Pressure too High, open to waste again (4.0psi) @18:16:38.24 Handoff.select :waste @18:16:38.43 delay 1:00 @18:17:38.45 Handoff.select :blocked @18:18:05.45 Handoff.select :waste @18:18:05.59 PSI at @2.73psi at evacEnd @18:18:05.61 Handoff.select :blocked @18:18:05.78 Air.reconfigure :gulp @18:18:05.91 Air.seek :tVent @18:18:23.40 Stable @3.0psi after Handoff blocked @18:18:23.53 Air pumping 10 strokes to reach 28psi @18:18:23.54 Air stroke #1 of 10 @18:18:23.60 Air.reconfigure :pressurize @18:18:23.71 Air.seek :pressurized @18:18:36.60 3.9psi after pressurize @18:18:36.62 Air.reconfigure :compress @18:18:36.76 Air.seek :evac @18:18:39.48 4.1psi after compress @18:19:50.01 22.1psi after compress (stable) @18:19:50.03 Air.reconfigure :gulp @18:19:50.18 Air.seek :tVent @18:20:00.11 24.2psi after gulp @18:20:00.13 Air stroke #2 of 10 @18:20:00.18 Air.reconfigure :pressurize @18:20:00.30 Air.seek :pressurized @18:20:13.19 22.8psi after pressurize @18:20:13.21 Air.reconfigure :compress @18:20:13.33 Air.seek :evac @18:20:16.06 21.8psi after compress @18:20:34.61 Reached 28.1 of 28.0psi after pumping 4672ul (3.00 strokes) @18:20:34.64 I'm just before the explosive evac @18:20:34.66 Handoff.select :waste @18:20:44.77 delay 1:00 @18:21:44.80 Handoff.select :blocked @18:22:03.03 Pressure too High, open to waste again (6.2psi) @18:22:03.04 Handoff.select :waste @18:22:03.20 delay 1:00 @18:23:03.23 Handoff.select :blocked @18:23:08.15 Pressure too High, open to waste again (4.4psi) @18:23:08.16 Handoff.select :waste @18:23:08.32 delay 1:00 @18:24:08.34 Handoff.select :blocked @18:24:32.37 Pressure too High, open to waste again (4.0psi) @18:24:32.39 Handoff.select :waste @18:24:32.55 delay 1:00 @18:25:32.57 Handoff.select :blocked @18:25:59.40 Handoff.select :waste @18:25:59.55 PSI at @1.77psi at evacEnd @18:25:59.58 Air.reconfigure :default @18:25:59.72 Air.seek :fVent @18:26:01.20 delay 5 seconds @18:26:06.22 Seawater evacuated, Presure above/below filter released. Lysis begins @18:26:06.34 Lysis1.reconfigure :slow @18:26:06.45 Lysis1.seek 1050ul @18:26:36.52 delay 5 seconds @18:26:41.55 Handoff.select :blocked @18:26:41.78 Lysis1.seek 450ul @18:27:41.74 delay 3 seconds @18:27:44.83 Air.reconfigure to mix into 1.37806 parts Lysis1 @18:27:45.50 Air.seek :evac @18:27:45.61 Lysis1.seek 300ul @18:28:00.74 Air.reconfigure :default @18:28:00.84 Air.seek :full @18:28:15.09 Lysis1.seek :empty @18:28:45.25 Lysis Delivered. Syringe pressure @44.7psi @18:28:45.33 PuckHeater.seek 84.6C @18:29:22.08 PuckHeater.hold 15:00,84.6C @18:44:19.08 Lysis complete. Syringe pressure @28.5psi @18:44:19.10 Handoff.select :blocked @18:44:19.25 Lysis1.reconfigure :halfSpeed @18:44:19.35 Lysis1.seek 200ul @18:44:23.18 delay 1 second @18:44:24.22 Lysis1.seek :empty @18:44:28.10 Initial AirS pressure @32.6psi @18:44:28.25 Lysis1.reconfigure :extract @18:44:28.36 Lysis1.seek 875ul,10:00 @18:44:29.74 Air pumping 10 strokes to reach 21psi @18:44:29.75 Air stroke #1 of 10 @18:44:29.80 Air.reconfigure :pressurize @18:44:29.92 Air.seek :pressurized @18:44:42.81 9.4psi after pressurize @18:44:42.84 Air.reconfigure :compress @18:44:42.97 Air.seek :evac @18:44:45.69 19.5psi after compress @18:45:00.35 15.1psi after compress (stable) @18:45:00.37 Air.reconfigure :gulp @18:45:00.50 Air.seek :tVent @18:45:10.44 15.9psi after gulp @18:45:10.46 Air stroke #2 of 10 @18:45:10.52 Air.reconfigure :pressurize @18:45:10.63 Air.seek :pressurized @18:45:23.51 15.1psi after pressurize @18:45:23.54 Air.reconfigure :compress @18:45:23.68 Air.seek :evac @18:45:26.40 17.4psi after compress @18:45:44.51 15.6psi after compress (stable) @18:45:44.55 Air.reconfigure :gulp @18:45:44.68 Air.seek :tVent @18:45:54.62 15.8psi after gulp @18:45:54.63 Air stroke #3 of 10 @18:45:54.69 Air.reconfigure :pressurize @18:45:54.83 Air.seek :pressurized @18:45:57.50 Air.reconfigure :default @18:45:57.58 Air.hold @18:45:58.34 Lysis1 at 875ul pressure @15.8psi @18:45:58.39 Lysis1.reconfigure :default @18:45:58.49 Lysis1.seek 900ul @18:45:59.32 Syringe::Overpressure in PROCESSING -- 15.8psi after recovery pull @18:45:59.34 Skipping SPR because lysate volume unknown @18:45:59.35 SPR.command "start 2 14" @18:46:00.63 Handoff.select :waste @18:46:01.12 Ended log /var/log/esp/spr19jul1518h.spr @18:46:01.14 SPR.command "stats_off" @18:46:01.66 Handoff.select :close @18:46:01.84
Gate.power :heat,:OFF @18:46:01.87 Gate.power :cartridge,:OFF @18:46:02.00 Carousel.seek 29 @18:46:02.26 Plunge.seek :locked @18:46:03.12 PinPort.seek :clear @18:46:07.80 Archive.seek :clear @18:46:08.02 Air.seek :clear @18:46:08.22 Lysis1.seek :clear @18:46:08.43 Lysis2.seek :clear @18:46:25.62
Archive.coast @18:46:25.70 Air.coast @18:46:25.77 Lysis1.coast @18:46:25.85 Lysis2.coast @18:46:25.93 Plunge.coast @18:46:26.01 SamplePump.coast @18:46:26.09 Toroid.coast @18:46:26.17 Carousel.coast @18:46:26.25 PinPort.coast @18:46:26.50 Gate.power :motor,:OFF @18:46:26.52 Gate.power :core,:OFF @18:46:26.55 Gate.power :analytic1,:OFF @18:46:26.60 Gate.power :analytic2,:OFF @18:46:26.64 Gate.power :analytic3,:OFF @18:46:26.67 Gate.power :main,:OFF @18:46:26.70 Safely stopped and ready to power off @18:46:26.99 delay 30 seconds @18:46:57.12 Gate.power :main,:ON,limit to 5000mA @18:46:57.17 Gate.power :analytic1,:ON,limit to 5000mA @18:46:57.19 Gate.power :analytic2,:ON,limit to 5000mA @18:46:57.22 Gate.power :analytic3,:ON,limit to 5000mA @18:46:57.32 Powering core bus @18:46:59.74 SPR Module 1, FW Rev. B, FPGA Rev. C @18:46:59.93
Archive.configure :default @18:47:00.10 Air.configure :default @18:47:00.26 Lysis1.configure :default @18:47:00.41 Lysis2.configure :default @18:47:00.59 Plunge.configure :default @18:47:00.76 SamplePump.configure :default @18:47:00.96 ExtraPump.configure :default @18:47:01.14 Toroid.configure :default @18:47:01.32 Carousel.configure :default @18:47:01.50 Pressure.configure :default @18:47:01.64 PinPort.configure :default @18:47:01.73 All elf controllers running firmware version 4.58 @18:47:01.76 Gate.power :motor,:ON,limit to 5000mA @18:47:02.16 Archive.reconfigure :default @18:47:02.38 Air.reconfigure :default @18:47:02.59 Air.home.jog 0 @18:47:02.67 Archive.home.jog 0 @18:47:02.96 Toroid.reconfigure :default @18:47:03.02 Lysis2.reconfigure :default @18:47:03.06 Lysis1.reconfigure :default @18:47:03.21 PinPort.reconfigure :default @18:47:03.32 Plunge.reconfigure :default @18:47:03.61 Toroid.home.jog 0 @18:47:03.70 Lysis2.home.jog 0 @18:47:03.80 PinPort.home.jog 0 @18:47:03.89 Lysis1.home.jog 0 @18:47:03.98 Plunge.home.jog 0 @18:47:04.27 Archive.reconfigure :homing @18:47:04.44 Air.reconfigure :homing @18:47:04.77 Archive.jog 1351 @18:47:04.86 Air.jog 1412 @18:47:05.08 Toroid.reconfigure :homing @18:47:05.14 Lysis2.reconfigure :homing @18:47:05.20 PinPort.reconfigure :homing @18:47:05.25 Plunge.reconfigure :homing @18:47:05.32 Lysis1.reconfigure :homing @18:47:05.65 Toroid.jog 626 @18:47:05.75 Plunge.jog 1555 @18:47:06.46 Lysis2.jog 172 @18:47:06.55 PinPort.jog -107 @18:47:06.65 Lysis1.jog 1409 @18:47:06.77 Air.setRawPosition! 50 @18:47:06.81 Archive.setRawPosition! 50 @18:47:06.95 Air.seek :home @18:47:07.02 Archive.seek :home @18:47:07.25 Lysis2.setRawPosition! 50 @18:47:07.28 PinPort.setRawPosition! 0 @18:47:07.41 Lysis2.seek :home @18:47:07.48 PinPort.seek :home @18:47:07.76 PinPort.reconfigure :default @18:47:07.84 Plunge.setRawPosition! 50 @18:47:07.89 Archive.reconfigure :default @18:47:07.94 Air.reconfigure :default @18:47:08.12 Plunge.seek :home @18:47:08.51 Toroid.setRawPosition! 0 @18:47:08.55 Lysis2.reconfigure :default @18:47:08.60 Lysis1.setRawPosition! 50 @18:47:08.79 Toroid.seek :home @18:47:08.84 Lysis1.seek :home @18:47:09.13 Plunge.reconfigure :default @18:47:09.16 Toroid.reconfigure :default @18:47:09.43 Lysis1.reconfigure :default @18:47:09.86
Toroid.seek :clear @18:47:11.52 Carousel.reconfigure :default @18:47:11.63 Carousel.home.jog 0 @18:47:12.18 Carousel.seek 29 @18:47:12.38 Selecting Cartridge 28 @18:47:12.73 Carousel.seek 28 @18:47:13.29 Lysis1.seek :locked @18:47:17.50 Plunge.seek :locked @18:47:17.69 Air.seek :locked @18:47:21.88
Powering cartridge bus @18:47:24.04 Gate.setIR 1750,5000,0,6 @18:47:24.17 Gate.setIR 0,5000,0,6 @18:47:24.26 Loaded Lyse-n-Go Cartridge @18:47:24.27 PuckHeater.configure HeatConfig @18:47:24.36 Gate.power :heat,:ON,limit to 5000mA @18:47:24.71 Duration of filtering limited to 2:05:00 @18:47:25.09 Priming sample loop w/100ml, bypass w/10ml @18:47:25.10 SamplePump.setPosition! 0ml @18:47:25.19 Bypass.open @18:47:26.75 Intake.open @18:47:27.19 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @18:47:30.21 Vacuum tare is 51% of full scale @18:47:30.41 Pressure.reconfigure :default @18:47:30.50 Pressure.hold @18:47:30.79 SamplePump.reconfigure :prime @18:47:30.90 SamplePump.seek 10ml,1:10 @18:47:39.88 Pressure.coast @18:47:39.97 SamplePump.setPosition! 0ml @18:47:40.03 Exhaust.open @18:47:41.52 Bypass.close @18:47:43.14 Pressure.reconfigure :default @18:47:43.23 Pressure.hold @18:47:43.57 SamplePump.reconfigure :prime @18:47:43.69 SamplePump.seek 100ml,7:10 @18:49:31.29 Pressure.coast @18:49:31.39 Bypass.open @18:49:32.13 Intake.close @18:49:33.04 Toroid.reconfigure :hold @18:49:33.14 Toroid.seek :crack @18:49:33.98 Toroid.reconfigure :default @18:49:34.17 Toroid.seek :clear @18:49:35.79 Toroid.reconfigure :hold @18:49:35.91 Toroid.seek :cartridge @18:49:37.76 Toroid.reconfigure :default @18:49:37.87 Toroid.seek :clear @18:49:39.95 Pressurizing cartridge to 14psi above 14.9psia @18:49:39.97 SamplePump.setPosition! 0ml @18:49:40.05 Intake.open @18:49:40.86 Bypass.close @18:49:41.61 Exhaust.close @18:49:42.51 Pressure.reconfigure :default @18:49:42.60 Pressure.hold @18:49:42.88 SamplePump.reconfigure :charge @18:49:42.99 SamplePump.seek 2.3ml,41 seconds @18:49:57.99 Pressure.coast @18:49:58.08 Intake.close @18:49:58.93 Pressurized cartridge with 1.054ml to 14.0psi @18:49:58.94 Isolated @30.0psia (15.1psi) @18:49:58.99 Checking for cartridge leaks from 30.0psia @18:49:59.05 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @18:50:05.01 Sampling 1000.0ml @18:50:05.03 SamplePump.setPosition! 0ml @18:50:05.13 Exhaust.open @18:50:05.84 Intake.open @18:50:06.16 Pressure.reconfigure :default @18:50:06.26 Pressure.hold @18:50:06.45 Sea 1.9m deep (17.5psia) @18:50:06.66 SamplePump.reconfigure :sample @18:50:06.77 SamplePump.seek 1000ml,1:07:09 @18:50:09.24 Cartridge 28 sampling 1/1000ml at 0.47ml/s with 13.8psi vacuum 3.0m deep (19.1psia) @18:51:09.23 Cartridge 28 sampling 27/1000ml at 0.42ml/s with 12.3psi vacuum 1.9m deep (17.5psia) @18:52:09.23 Cartridge 28 sampling 52/1000ml at 0.42ml/s with 12.9psi vacuum 2.3m deep (18.1psia) @18:53:09.24 Cartridge 28 sampling 78/1000ml at 0.43ml/s with 13.4psi vacuum 2.2m deep (18.0psia) @18:54:09.24 Cartridge 28 sampling 103/1000ml at 0.41ml/s with 14.4psi vacuum @18:55:09.25 Cartridge 28 sampling 127/1000ml at 0.40ml/s with 12.6psi vacuum 1.9m deep (17.5psia) @18:56:09.24 Cartridge 28 sampling 151/1000ml at 0.39ml/s with 15.0psi vacuum @18:57:09.25 Cartridge 28 sampling 175/1000ml at 0.42ml/s with 14.2psi vacuum 1.7m deep (17.2psia) @18:58:09.23 Cartridge 28 sampling 200/1000ml at 0.42ml/s with 14.1psi vacuum 2.5m deep (18.4psia) @18:59:09.24 Cartridge 28 sampling 224/1000ml at 0.41ml/s with 13.6psi vacuum 2.4m deep (18.2psia) @19:00:09.24 Cartridge 28 sampling 248/1000ml at 0.40ml/s with 14.9psi vacuum @19:01:09.23 Cartridge 28 sampling 272/1000ml at 0.39ml/s with 11.5psi vacuum 2.1m deep (17.8psia) @19:02:09.24 Cartridge 28 sampling 296/1000ml at 0.38ml/s with 8.9psi vacuum 4.8m deep (21.7psia) @19:03:09.24 Cartridge 28 sampling 319/1000ml at 0.35ml/s with 14.9psi vacuum @19:04:09.24 Cartridge 28 sampling 342/1000ml at 0.39ml/s with 15.4psi vacuum @19:05:09.24 Cartridge 28 sampling 364/1000ml at 0.38ml/s with 11.7psi vacuum 2.1m deep (17.8psia) @19:06:09.24 Cartridge 28 sampling 387/1000ml at 0.38ml/s with 13.4psi vacuum @19:07:09.23 Cartridge 28 sampling 409/1000ml at 0.37ml/s with 13.2psi vacuum @19:08:09.23 Cartridge 28 sampling 431/1000ml at 0.37ml/s with 14.1psi vacuum 2.2m deep (17.9psia) @19:09:09.24 Cartridge 28 sampling 453/1000ml at 0.36ml/s with 14.5psi vacuum 1.6m deep (17.0psia) @19:10:09.25 Cartridge 28 sampling 474/1000ml at 0.36ml/s with 14.1psi vacuum 1.9m deep (17.6psia) @19:11:09.23 Cartridge 28 sampling 495/1000ml at 0.35ml/s with 12.5psi vacuum 2.3m deep (18.1psia) @19:12:09.25 Cartridge 28 sampling 515/1000ml at 0.35ml/s with 12.2psi vacuum 2.1m deep (17.8psia) @19:13:09.22 Cartridge 28 sampling 535/1000ml at 0.33ml/s with 13.1psi vacuum 1.6m deep (17.0psia) @19:14:09.23 Cartridge 28 sampling 555/1000ml at 0.30ml/s with 14.8psi vacuum @19:15:09.25 Cartridge 28 sampling 575/1000ml at 0.30ml/s with 15.2psi vacuum @19:16:09.25 Cartridge 28 sampling 594/1000ml at 0.31ml/s with 11.1psi vacuum 1.8m deep (17.3psia) @19:17:09.24 Cartridge 28 sampling 613/1000ml at 0.34ml/s with 12.9psi vacuum 2.0m deep (17.7psia) @19:18:09.23 Cartridge 28 sampling 632/1000ml at 0.31ml/s with 12.1psi vacuum @19:19:09.24 Cartridge 28 sampling 651/1000ml at 0.31ml/s with 14.5psi vacuum @19:20:09.24 Cartridge 28 sampling 669/1000ml at 0.31ml/s with 13.4psi vacuum 1.6m deep (17.1psia) @19:21:09.24 Cartridge 28 sampling 687/1000ml at 0.30ml/s with 13.7psi vacuum @19:22:09.24 Cartridge 28 sampling 705/1000ml at 0.29ml/s with 12.1psi vacuum 1.7m deep (17.1psia) @19:23:09.23 Cartridge 28 sampling 723/1000ml at 0.29ml/s with 11.0psi vacuum 1.6m deep (17.1psia) @19:24:09.23 Cartridge 28 sampling 740/1000ml at 0.28ml/s with 11.5psi vacuum 2.0m deep (17.7psia) @19:25:09.25 Cartridge 28 sampling 757/1000ml at 0.30ml/s with 11.7psi vacuum 2.3m deep (18.0psia) @19:26:09.23 Cartridge 28 sampling 774/1000ml at 0.30ml/s with 13.3psi vacuum 2.3m deep (18.0psia) @19:27:09.24 Cartridge 28 sampling 791/1000ml at 0.28ml/s with 14.5psi vacuum 1.8m deep (17.4psia) @19:28:09.24 Cartridge 28 sampling 808/1000ml at 0.26ml/s with 8.4psi vacuum 3.5m deep (19.9psia) @19:29:09.23 Cartridge 28 sampling 824/1000ml at 0.28ml/s with 11.3psi vacuum 2.5m deep (18.4psia) @19:30:09.25 Cartridge 28 sampling 840/1000ml at 0.27ml/s with 14.0psi vacuum @19:31:09.25 Cartridge 28 sampling 856/1000ml at 0.28ml/s with 13.2psi vacuum 2.5m deep (18.3psia) @19:32:09.25 Cartridge 28 sampling 872/1000ml at 0.25ml/s with 15.4psi vacuum @19:33:09.23 Cartridge 28 sampling 888/1000ml at 0.27ml/s with 14.6psi vacuum 2.0m deep (17.6psia) @19:34:09.25 Cartridge 28 sampling 904/1000ml at 0.25ml/s with 15.1psi vacuum 1.8m deep (17.3psia) @19:35:09.24 Cartridge 28 sampling 920/1000ml at 0.25ml/s with 15.5psi vacuum @19:36:09.24 Cartridge 28 sampling 935/1000ml at 0.25ml/s with 15.2psi vacuum 2.0m deep (17.6psia) @19:37:09.24 Cartridge 28 sampling 951/1000ml at 0.27ml/s with 14.5psi vacuum 2.3m deep (18.1psia) @19:38:09.23 Cartridge 28 sampling 967/1000ml at 0.26ml/s with 13.1psi vacuum 1.9m deep (17.5psia) @19:39:09.23 Cartridge 28 sampling 982/1000ml at 0.26ml/s with 14.3psi vacuum 1.9m deep (17.4psia) @19:40:09.23 Cartridge 28 sampling 997/1000ml at 0.25ml/s with 10.5psi vacuum 3.5m deep (19.8psia) @19:40:19.79 Pressure.coast @19:40:19.96 Intake.close @19:40:20.04 Exhaust.close @19:40:20.84 Toroid.reconfigure :hold @19:40:20.94 Toroid.seek :bypass @19:40:22.61 Toroid.reconfigure :default @19:40:22.71 Toroid.seek :clear @19:40:24.38 Sampled 1000.0ml @19:40:26.49 SPR.command "read_sequences" @19:40:26.84 SPR.command "stats_on" @19:40:26.91 SPR.command "start 0 1" @19:40:28.92 Begun log /var/log/esp/spr19jul1519h.spr @19:40:29.70 Handoff.select :waste @19:40:29.90 Archive.seek :empty @19:40:37.56 Syringe tare is 19% of full scale @19:40:47.73 PinPort.seek :cartridge @19:40:52.34 Lysis1.seek 1350ul @19:40:54.87 Lysis2.seek 1700ul @19:40:58.02 Plunge.seek :reagent @19:40:58.91 Evacuating puck with filter bubble point of 30psi @19:40:58.93 PinPort.seek :cartridge @19:40:59.07 Handoff.select :waste @19:41:06.85 Air pumping 1 strokes to reach 4psi @19:41:06.87 Air.reconfigure :gulp @19:41:06.99 Air.seek :tVent @19:41:08.87 -0.1psi after gulp @19:41:08.89 Air stroke #1 of 1 @19:41:08.91 Air.reconfigure :pressurize @19:41:09.07 Air.seek :pressurized @19:41:21.97 0.2psi after pressurize @19:41:22.00 Air.reconfigure :compress @19:41:22.12 Air.seek :evac @19:41:24.87 0.5psi after compress @19:41:39.45 0.2psi after compress (stable) @19:41:39.65 at 0.1psi Opened to waste @19:41:39.66 Handoff.select :blocked @19:41:39.91 Air pumping 10 strokes to reach 30psi @19:41:39.94 Air.reconfigure :gulp @19:41:40.07 Air.seek :tVent @19:41:50.02 10.2psi after gulp @19:41:50.05 Air stroke #1 of 10 @19:41:50.09 Air.reconfigure :pressurize @19:41:50.21 Air.seek :pressurized @19:42:03.10 10.8psi after pressurize @19:42:03.13 Air.reconfigure :compress @19:42:03.27 Air.seek :evac @19:42:06.01 16.0psi after compress @19:42:26.99 29.1psi after compress (stable) @19:42:27.01 Air.reconfigure :gulp @19:42:27.15 Air.seek :tVent @19:42:37.09 29.3psi after gulp @19:42:37.11 Air stroke #2 of 10 @19:42:37.17 Air.reconfigure :pressurize @19:42:37.26 Air.seek :pressurized @19:42:50.18 27.9psi after pressurize @19:42:50.22 Air.reconfigure :compress @19:42:50.34 Air.seek :evac @19:42:52.49 Reached 30.4 of 30.0psi after pumping 3079ul (1.98 strokes) @19:42:52.50 Handoff.select :waste @19:43:11.28 delay 1:00 @19:44:11.30 Handoff.select :blocked @19:44:37.74 Handoff.select :waste @19:44:37.89 PSI at @0.82psi at evacEnd @19:44:37.91 Handoff.select :blocked @19:44:38.09 Air.reconfigure :gulp @19:44:38.21 Air.seek :tVent @19:44:55.48 Stable @0.8psi after Handoff blocked @19:44:55.62 Air pumping 10 strokes to reach 26psi @19:44:55.63 Air stroke #1 of 10 @19:44:55.68 Air.reconfigure :pressurize @19:44:55.80 Air.seek :pressurized @19:45:08.71 1.1psi after pressurize @19:45:08.73 Air.reconfigure :compress @19:45:08.87 Air.seek :evac @19:45:11.61 4.2psi after compress @19:45:34.35 13.1psi after compress (stable) @19:45:34.37 Air.reconfigure :gulp @19:45:34.50 Air.seek :tVent @19:45:44.45 13.7psi after gulp @19:45:44.48 Air stroke #2 of 10 @19:45:44.52 Air.reconfigure :pressurize @19:45:44.65 Air.seek :pressurized @19:45:57.59 13.8psi after pressurize @19:45:57.61 Air.reconfigure :compress @19:45:57.74 Air.seek :evac @19:46:00.46 16.7psi after compress @19:46:20.24 24.4psi after compress (stable) @19:46:20.27 Air.reconfigure :gulp @19:46:20.39 Air.seek :tVent @19:46:30.34 24.9psi after gulp @19:46:30.36 Air stroke #3 of 10 @19:46:30.42 Air.reconfigure :pressurize @19:46:30.54 Air.seek :pressurized @19:46:43.44 24.8psi after pressurize @19:46:43.48 Air.reconfigure :compress @19:46:43.60 Air.seek :evac @19:46:45.99 Reached 26.1 of 25.8psi after pumping 4655ul (2.99 strokes) @19:46:46.01 I'm just before the explosive evac @19:46:46.05 Handoff.select :waste @19:46:53.80 delay 1:00 @19:47:53.83 Handoff.select :blocked @19:48:20.11 Handoff.select :waste @19:48:20.26 PSI at @0.60psi at evacEnd @19:48:20.29 Air.reconfigure :default @19:48:20.47 Air.seek :fVent @19:48:22.17 delay 5 seconds @19:48:27.22 Seawater evacuated, Presure above/below filter released. Lysis begins @19:48:27.34 Lysis1.reconfigure :slow @19:48:27.43 Lysis1.seek 1050ul @19:48:57.50 delay 5 seconds @19:49:02.52 Handoff.select :blocked @19:49:02.76 Lysis1.seek 450ul @19:50:02.78 delay 3 seconds @19:50:05.89 Air.reconfigure to mix into 1.37806 parts Lysis1 @19:50:06.68 Air.seek :evac @19:50:06.74 Lysis1.seek 300ul @19:50:21.95 Air.reconfigure :default @19:50:22.05 Air.seek :full @19:50:36.32 Lysis1.seek :empty @19:51:06.51 Lysis Delivered. Syringe pressure @17.0psi @19:51:06.60 PuckHeater.seek 84.6C @19:51:55.28 PuckHeater.hold 15:00,84.6C @20:06:55.54 Lysis complete. Syringe pressure @18.0psi @20:06:55.55 Handoff.select :blocked @20:06:55.72 Lysis1.reconfigure :halfSpeed @20:06:55.82 Lysis1.seek 200ul @20:06:59.63 delay 1 second @20:07:00.68 Lysis1.seek :empty @20:07:04.56 Initial AirS pressure @18.2psi @20:07:04.68 Lysis1.reconfigure :extract @20:07:04.81 Lysis1.seek 875ul,10:00 @20:07:05.45 Air pumping 10 strokes to reach 21psi @20:07:05.47 Air stroke #1 of 10 @20:07:05.51 Air.reconfigure :pressurize @20:07:05.63 Air.seek :pressurized @20:07:18.50 Reached 19.9 of 21.0psi after pumping 1395ul (0.90 strokes) @20:07:19.29 Air pumping 9.10438661710037 strokes to reach 21psi @20:07:19.31 Air.reconfigure :gulp @20:07:19.43 Air.seek :tVent @20:07:28.43 15.7psi after gulp @20:07:28.44 Air stroke #1 of 9.10438661710037 @20:07:28.52 Air.reconfigure :pressurize @20:07:28.62 Air.seek :pressurized @20:07:41.51 16.2psi after pressurize @20:07:41.53 Air.reconfigure :compress @20:07:41.66 Air.seek :evac @20:07:44.41 16.1psi after compress @20:08:12.29 15.1psi after compress (stable) @20:08:12.31 Air.reconfigure :gulp @20:08:12.43 Air.seek :tVent @20:08:22.40 15.0psi after gulp @20:08:22.42 Air stroke #2 of 9.10438661710037 @20:08:22.49 Air.reconfigure :pressurize @20:08:22.59 Air.seek :pressurized @20:08:35.48 14.3psi after pressurize @20:08:35.51 Air.reconfigure :compress @20:08:35.63 Air.seek :evac @20:08:38.38 18.5psi after compress @20:08:52.11 Air.reconfigure :default @20:08:52.20 Air.hold @20:08:52.46 Lysis1 at 875ul pressure @15.6psi @20:08:52.50 Lysis1.reconfigure :default @20:08:52.62 Lysis1.seek 900ul @20:08:53.50 Lysis1 at 900ul pressure(finPSI) @11.9psi @20:08:53.52 delay 1 second @20:08:54.74 Lysis1 at 900ul pressure @12.6psi @20:08:54.77 Air.reconfigure :halfSpeed @20:08:54.88 Air.seek :fVent @20:08:57.19 Puck Top Vented. Syringe pressure @7.2psi @20:08:57.21 Handoff.select :waste @20:08:57.40 delay 5 seconds @20:09:02.43 Lysate Recovered in LyS1 @20:09:02.45 Lysis1.reconfigure :DAmix @20:09:02.62 Lysis2.reconfigure :DAmix @20:09:03.31 Lysis1.seek 650ul @20:09:03.42 Lysis2.seek 1450ul @20:09:38.50 delay 5 seconds @20:09:43.52 Handoff.select SPR @20:09:43.67 SPR.command "start 2 14" @20:09:44.38 delay 10 seconds @20:09:54.40 SPR.command "start 1 0" @20:09:57.58 Waiting up to 4:00 for SPR to enter state 1 @20:12:30.24 SPR.command "hold_on" @20:12:31.63 SPR Dilution 1 of 1 -- Running Experiment 1 @20:12:32.26 Lysis1.seek 350ul @20:12:32.34 Lysis2.seek 1150ul @20:13:14.41 volL1 = 300.0 and volL2 = 300.0 @20:13:14.44 delay 15 seconds @20:13:29.47 SPR.command "hold_off" @20:13:32.30 Waiting up to 25:00 for SPR to enter state 7 @20:33:46.17 SPR Analysis has Completed @20:33:46.19 Handoff.select :waste @20:33:47.09 Ended log /var/log/esp/spr19jul1519h.spr @20:33:47.11 SPR.command "stats_off" @20:33:47.63 Handoff.select :close @20:33:47.81
Gate.power :heat,:OFF @20:33:47.83 Gate.power :cartridge,:OFF @20:33:47.96 Carousel.seek 28 @20:33:48.21 Plunge.seek :locked @20:33:49.08 PinPort.seek :clear @20:33:53.76 Archive.seek :clear @20:33:53.96 Air.reconfigure :default @20:33:54.17 Lysis1.reconfigure :default @20:33:54.35 Air.seek :clear @20:33:54.44 Lysis1.seek :clear @20:33:54.57 Lysis2.reconfigure :default @20:33:54.68 Lysis2.seek :clear @20:34:11.57
Archive.coast @20:34:11.64 Air.coast @20:34:11.71 Lysis1.coast @20:34:11.78 Lysis2.coast @20:34:11.85 Plunge.coast @20:34:11.92 SamplePump.coast @20:34:12.00 Toroid.coast @20:34:12.07 Carousel.coast @20:34:12.15 PinPort.coast @20:34:12.38 Gate.power :motor,:OFF @20:34:12.43 Gate.power :core,:OFF @20:34:12.45 Gate.power :analytic1,:OFF @20:34:12.48 Gate.power :analytic2,:OFF @20:34:12.52 Gate.power :analytic3,:OFF @20:34:12.55 Gate.power :main,:OFF @20:34:12.59 Safely stopped and ready to power off @20:34:12.94 delay 30 seconds @20:34:43.07 Gate.power :main,:ON,limit to 5000mA @20:34:43.09 Gate.power :analytic1,:ON,limit to 5000mA @20:34:43.13 Gate.power :analytic2,:ON,limit to 5000mA @20:34:43.17 Gate.power :analytic3,:ON,limit to 5000mA @20:34:43.27 Powering core bus @20:34:45.67 SPR Module 1, FW Rev. B, FPGA Rev. C @20:34:45.86
Archive.configure :default @20:34:46.04 Air.configure :default @20:34:46.19 Lysis1.configure :default @20:34:46.34 Lysis2.configure :default @20:34:46.51 Plunge.configure :default @20:34:46.69 SamplePump.configure :default @20:34:46.87 ExtraPump.configure :default @20:34:47.05 Toroid.configure :default @20:34:47.22 Carousel.configure :default @20:34:47.40 Pressure.configure :default @20:34:47.57 PinPort.configure :default @20:34:47.65 All elf controllers running firmware version 4.58 @20:34:47.68 Gate.power :motor,:ON,limit to 5000mA @20:34:48.51 PinPort.reconfigure :default @20:34:48.58 Toroid.reconfigure :default @20:34:48.62 Plunge.reconfigure :default @20:34:48.69 Lysis1.reconfigure :default @20:34:48.75 Air.reconfigure :default @20:34:48.80 Archive.reconfigure :default @20:34:48.88 Lysis2.reconfigure :default @20:34:49.30 Lysis2.home.jog 0 @20:34:49.39 PinPort.home.jog 0 @20:34:49.48 Archive.home.jog 0 @20:34:49.58 Lysis1.home.jog 0 @20:34:49.66 Plunge.home.jog 0 @20:34:49.76 Air.home.jog 0 @20:34:49.86 Toroid.home.jog 0 @20:34:50.71 PinPort.reconfigure :homing @20:34:50.81 Toroid.reconfigure :homing @20:34:50.85 Lysis2.reconfigure :homing @20:34:50.91 Air.reconfigure :homing @20:34:51.00 Plunge.reconfigure :homing @20:34:51.05 Archive.reconfigure :homing @20:34:51.17 Lysis1.reconfigure :homing @20:34:51.51 Archive.jog 1353 @20:34:51.61 Plunge.jog 1550 @20:34:51.69 Air.jog 1414 @20:34:51.78 Toroid.jog 618 @20:34:51.88 PinPort.jog -106 @20:34:51.97 Lysis2.jog 166 @20:34:52.07 Lysis1.jog 1405 @20:34:52.20 PinPort.setRawPosition! 0 @20:34:52.29 PinPort.seek :home @20:34:52.44 PinPort.reconfigure :default @20:34:52.56 Lysis2.setRawPosition! 50 @20:34:52.64 Lysis2.seek :home @20:34:52.78 Archive.setRawPosition! 50 @20:34:52.88 Archive.seek :home @20:34:53.04 Lysis2.reconfigure :default @20:34:53.07 Air.setRawPosition! 50 @20:34:53.14 Plunge.setRawPosition! 50 @20:34:53.30 Air.seek :home @20:34:53.50 Plunge.seek :home @20:34:53.67 Archive.reconfigure :default @20:34:53.71 Lysis1.setRawPosition! 50 @20:34:53.88 Lysis1.seek :home @20:34:54.03 Toroid.setRawPosition! 0 @20:34:54.08 Plunge.reconfigure :default @20:34:54.11 Air.reconfigure :default @20:34:54.31 Toroid.seek :home @20:34:54.50 Toroid.reconfigure :default @20:34:54.53 Lysis1.reconfigure :default @20:34:55.03
Toroid.seek :clear @20:34:56.70 Carousel.reconfigure :default @20:34:56.80 Carousel.home.jog 0 @20:34:57.34 Carousel.seek 28 @20:34:57.53 Selecting Cartridge 27 @20:34:57.87 Carousel.seek 27 @20:34:58.46 Lysis1.seek :locked @20:35:02.66 Plunge.seek :locked @20:35:02.86 Air.seek :locked @20:35:07.07
Powering cartridge bus @20:35:09.22 Gate.setIR 1750,5000,0,6 @20:35:09.35 Gate.setIR 0,5000,0,6 @20:35:09.44 Loaded Lyse-n-Go Cartridge @20:35:09.45 PuckHeater.configure HeatConfig @20:35:09.54 Gate.power :heat,:ON,limit to 5000mA @20:35:10.38 Duration of filtering limited to 2:05:00 @20:35:10.75 Priming sample loop w/100ml, bypass w/10ml @20:35:10.78 SamplePump.setPosition! 0ml @20:35:10.86 Bypass.open @20:35:12.42 Intake.open @20:35:13.33 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @20:35:16.39 Vacuum tare is 51% of full scale @20:35:16.59 Pressure.reconfigure :default @20:35:16.68 Pressure.hold @20:35:16.95 SamplePump.reconfigure :prime @20:35:17.07 SamplePump.seek 10ml,1:10 @20:35:26.05 Pressure.coast @20:35:26.11 SamplePump.setPosition! 0ml @20:35:26.22 Exhaust.open @20:35:27.69 Bypass.close @20:35:29.31 Pressure.reconfigure :default @20:35:29.40 Pressure.hold @20:35:29.75 SamplePump.reconfigure :prime @20:35:29.87 SamplePump.seek 100ml,7:10 @20:37:15.45 Pressure.coast @20:37:15.55 Bypass.open @20:37:16.32 Intake.close @20:37:17.20 Toroid.reconfigure :hold @20:37:17.30 Toroid.seek :crack @20:37:18.15 Toroid.reconfigure :default @20:37:18.25 Toroid.seek :clear @20:37:19.88 Toroid.reconfigure :hold @20:37:19.99 Toroid.seek :cartridge @20:37:21.84 Toroid.reconfigure :default @20:37:21.95 Toroid.seek :clear @20:37:24.04 Pressurizing cartridge to 14psi above 14.6psia @20:37:24.06 SamplePump.setPosition! 0ml @20:37:24.15 Intake.open @20:37:24.37 Bypass.close @20:37:25.16 Exhaust.close @20:37:26.02 Pressure.reconfigure :default @20:37:26.11 Pressure.hold @20:37:26.38 SamplePump.reconfigure :charge @20:37:26.49 SamplePump.seek 2.3ml,41 seconds @20:37:40.02 Pressure.coast @20:37:40.11 Intake.close @20:37:40.93 Pressurized cartridge with 0.857ml to 14.1psi @20:37:40.94 Isolated @30.3psia (15.8psi) @20:37:40.98 Checking for cartridge leaks from 30.3psia @20:37:41.05 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @20:37:46.45 Sampling 1000.0ml @20:37:46.47 SamplePump.setPosition! 0ml @20:37:46.57 Exhaust.open @20:37:47.25 Intake.open @20:37:47.61 Pressure.reconfigure :default @20:37:47.70 Pressure.hold @20:37:48.07 SamplePump.reconfigure :sample @20:37:48.18 SamplePump.seek 1000ml,1:07:09 @20:37:50.69 Cartridge 27 sampling 1/1000ml at 0.41ml/s with 13.1psi vacuum @20:38:50.70 Cartridge 27 sampling 27/1000ml at 0.41ml/s with 13.8psi vacuum @20:39:50.68 Cartridge 27 sampling 53/1000ml at 0.43ml/s with 12.8psi vacuum 1.7m deep (17.2psia) @20:40:50.70 Cartridge 27 sampling 78/1000ml at 0.42ml/s with 13.2psi vacuum @20:41:50.69 Cartridge 27 sampling 104/1000ml at 0.41ml/s with 14.8psi vacuum @20:42:51.20 Cartridge 27 sampling 129/1000ml at 0.43ml/s with 13.1psi vacuum @20:43:50.69 Cartridge 27 sampling 155/1000ml at 0.43ml/s with 12.1psi vacuum 2.0m deep (17.6psia) @20:44:50.70 Cartridge 27 sampling 180/1000ml at 0.42ml/s with 13.1psi vacuum @20:45:50.70 Cartridge 27 sampling 205/1000ml at 0.41ml/s with 12.8psi vacuum @20:46:50.69 Cartridge 27 sampling 231/1000ml at 0.44ml/s with 12.4psi vacuum 2.3m deep (18.1psia) @20:47:50.70 Cartridge 27 sampling 257/1000ml at 0.42ml/s with 13.0psi vacuum @20:48:50.69 Cartridge 27 sampling 282/1000ml at 0.43ml/s with 13.1psi vacuum @20:49:50.68 Cartridge 27 sampling 307/1000ml at 0.43ml/s with 13.4psi vacuum @20:50:50.68 Cartridge 27 sampling 332/1000ml at 0.43ml/s with 13.7psi vacuum 2.0m deep (17.7psia) @20:51:50.68 Cartridge 27 sampling 357/1000ml at 0.42ml/s with 13.0psi vacuum 2.0m deep (17.7psia) @20:52:50.68 Cartridge 27 sampling 382/1000ml at 0.42ml/s with 13.2psi vacuum 2.0m deep (17.7psia) @20:53:50.70 Cartridge 27 sampling 406/1000ml at 0.40ml/s with 11.7psi vacuum 2.3m deep (18.2psia) @20:54:50.69 Cartridge 27 sampling 431/1000ml at 0.41ml/s with 13.9psi vacuum 1.9m deep (17.5psia) @20:55:50.70 Cartridge 27 sampling 455/1000ml at 0.40ml/s with 11.7psi vacuum 2.1m deep (17.7psia) @20:56:50.68 Cartridge 27 sampling 479/1000ml at 0.41ml/s with 13.5psi vacuum 1.8m deep (17.3psia) @20:57:50.68 Cartridge 27 sampling 502/1000ml at 0.41ml/s with 14.3psi vacuum 2.1m deep (17.8psia) @20:58:50.69 Cartridge 27 sampling 526/1000ml at 0.37ml/s with 10.5psi vacuum 2.7m deep (18.7psia) @20:59:50.69 Cartridge 27 sampling 549/1000ml at 0.38ml/s with 11.0psi vacuum 2.4m deep (18.2psia) @21:00:50.69 Cartridge 27 sampling 572/1000ml at 0.37ml/s with 13.0psi vacuum 1.9m deep (17.5psia) @21:01:50.69 Cartridge 27 sampling 594/1000ml at 0.35ml/s with 10.8psi vacuum 1.7m deep (17.2psia) @21:02:50.68 Cartridge 27 sampling 616/1000ml at 0.38ml/s with 13.5psi vacuum @21:03:50.69 Cartridge 27 sampling 638/1000ml at 0.35ml/s with 13.5psi vacuum @21:04:50.70 Cartridge 27 sampling 660/1000ml at 0.36ml/s with 13.5psi vacuum 1.8m deep (17.3psia) @21:05:50.69 Cartridge 27 sampling 682/1000ml at 0.37ml/s with 12.6psi vacuum 2.2m deep (18.0psia) @21:06:50.69 Cartridge 27 sampling 703/1000ml at 0.33ml/s with 15.3psi vacuum @21:07:50.70 Cartridge 27 sampling 724/1000ml at 0.34ml/s with 10.3psi vacuum 3.0m deep (19.1psia) @21:08:50.70 Cartridge 27 sampling 745/1000ml at 0.34ml/s with 11.0psi vacuum 2.4m deep (18.3psia) @21:09:50.69 Cartridge 27 sampling 766/1000ml at 0.36ml/s with 12.5psi vacuum 2.1m deep (17.8psia) @21:10:50.68 Cartridge 27 sampling 786/1000ml at 0.35ml/s with 14.3psi vacuum @21:11:50.69 Cartridge 27 sampling 807/1000ml at 0.34ml/s with 9.9psi vacuum 3.2m deep (19.5psia) @21:12:50.68 Cartridge 27 sampling 827/1000ml at 0.34ml/s with 13.4psi vacuum 1.9m deep (17.5psia) @21:13:50.69 Cartridge 27 sampling 847/1000ml at 0.35ml/s with 11.0psi vacuum 3.4m deep (19.7psia) @21:14:50.68 Cartridge 27 sampling 867/1000ml at 0.33ml/s with 11.2psi vacuum 2.8m deep (18.9psia) @21:15:50.69 Cartridge 27 sampling 887/1000ml at 0.33ml/s with 13.0psi vacuum 2.1m deep (17.9psia) @21:16:50.69 Cartridge 27 sampling 906/1000ml at 0.33ml/s with 14.8psi vacuum 1.9m deep (17.5psia) @21:17:50.69 Cartridge 27 sampling 926/1000ml at 0.32ml/s with 12.7psi vacuum 1.8m deep (17.4psia) @21:18:50.70 Cartridge 27 sampling 945/1000ml at 0.31ml/s with 16.1psi vacuum @21:19:50.70 Cartridge 27 sampling 964/1000ml at 0.30ml/s with 12.0psi vacuum 1.9m deep (17.6psia) @21:20:50.68 Cartridge 27 sampling 982/1000ml at 0.32ml/s with 12.5psi vacuum 2.6m deep (18.5psia) @21:21:49.97 Pressure.coast @21:21:50.16 Intake.close @21:21:50.21 Exhaust.close @21:21:50.47 Toroid.reconfigure :hold @21:21:50.58 Toroid.seek :bypass @21:21:52.25 Toroid.reconfigure :default @21:21:52.35 Toroid.seek :clear @21:21:54.01 Sampled 1000.0ml @21:21:56.10 SPR.command "read_sequences" @21:21:56.34 SPR.command "stats_on" @21:21:56.40 SPR.command "start 0 1" @21:21:58.40 Begun log /var/log/esp/spr19jul1521h.spr @21:21:59.19 Handoff.select :waste @21:21:59.40 Archive.seek :empty @21:22:07.04 Syringe tare is 19% of full scale @21:22:17.26 PinPort.seek :cartridge @21:22:21.86 Lysis1.seek 1350ul @21:22:24.96 Lysis2.seek 1700ul @21:22:28.10 Plunge.seek :reagent @21:22:28.99 Evacuating puck with filter bubble point of 30psi @21:22:29.04 PinPort.seek :cartridge @21:22:29.18 Handoff.select :waste @21:22:36.94 Air pumping 1 strokes to reach 4psi @21:22:36.99 Air.reconfigure :gulp @21:22:37.09 Air.seek :tVent @21:22:38.93 0.0psi after gulp @21:22:38.95 Air stroke #1 of 1 @21:22:39.02 Air.reconfigure :pressurize @21:22:39.10 Air.seek :pressurized @21:22:52.01 0.1psi after pressurize @21:22:52.03 Air.reconfigure :compress @21:22:52.16 Air.seek :evac @21:22:54.86 0.1psi after compress @21:23:09.44 0.1psi after compress (stable) @21:23:09.63 at 0.1psi Opened to waste @21:23:09.66 Handoff.select :blocked @21:23:09.93 Air pumping 10 strokes to reach 30psi @21:23:09.97 Air.reconfigure :gulp @21:23:10.09 Air.seek :tVent @21:23:20.06 2.6psi after gulp @21:23:20.09 Air stroke #1 of 10 @21:23:20.15 Air.reconfigure :pressurize @21:23:20.26 Air.seek :pressurized @21:23:33.15 4.3psi after pressurize @21:23:33.18 Air.reconfigure :compress @21:23:33.32 Air.seek :evac @21:23:36.07 4.8psi after compress @21:24:37.19 27.6psi after compress (stable) @21:24:37.21 Air.reconfigure :gulp @21:24:37.34 Air.seek :tVent @21:24:47.29 29.4psi after gulp @21:24:47.31 Air stroke #2 of 10 @21:24:47.36 Air.reconfigure :pressurize @21:24:47.47 Air.seek :pressurized @21:25:00.41 28.6psi after pressurize @21:25:00.43 Air.reconfigure :compress @21:25:00.64 Air.seek :evac @21:25:03.38 27.2psi after compress @21:25:07.84 Reached 30.1 of 30.0psi after pumping 4672ul (3.00 strokes) @21:25:07.85 Handoff.select :waste @21:25:20.30 delay 1:00 @21:26:20.33 Handoff.select :blocked @21:26:47.21 Handoff.select :waste @21:26:47.37 PSI at @1.68psi at evacEnd @21:26:47.40 Handoff.select :blocked @21:26:47.57 Air.reconfigure :gulp @21:26:47.69 Air.seek :tVent @21:27:05.20 Stable @2.1psi after Handoff blocked @21:27:05.34 Air pumping 10 strokes to reach 27psi @21:27:05.35 Air stroke #1 of 10 @21:27:05.40 Air.reconfigure :pressurize @21:27:05.53 Air.seek :pressurized @21:27:18.43 2.8psi after pressurize @21:27:18.47 Air.reconfigure :compress @21:27:18.59 Air.seek :evac @21:27:21.36 2.9psi after compress @21:28:38.74 17.9psi after compress (stable) @21:28:38.77 Air.reconfigure :gulp @21:28:38.91 Air.seek :tVent @21:28:48.86 19.8psi after gulp @21:28:48.88 Air stroke #2 of 10 @21:28:48.94 Air.reconfigure :pressurize @21:28:49.05 Air.seek :pressurized @21:29:01.95 19.1psi after pressurize @21:29:01.98 Air.reconfigure :compress @21:29:02.10 Air.seek :evac @21:29:04.83 18.1psi after compress @21:29:45.43 Reached 27.2 of 27.1psi after pumping 4672ul (3.00 strokes) @21:29:45.45 I'm just before the explosive evac @21:29:45.47 Handoff.select :waste @21:30:07.12 delay 1:00 @21:31:07.15 Handoff.select :blocked @21:31:25.45 Pressure too High, open to waste again (4.1psi) @21:31:25.47 Handoff.select :waste @21:31:25.65 delay 1:00 @21:32:25.67 Handoff.select :blocked @21:32:52.50 Handoff.select :waste @21:32:52.65 PSI at @1.81psi at evacEnd @21:32:52.68 Air.reconfigure :default @21:32:52.80 Air.seek :fVent @21:32:54.29 delay 5 seconds @21:32:59.33 Seawater evacuated, Presure above/below filter released. Lysis begins @21:32:59.46 Lysis1.reconfigure :slow @21:32:59.56 Lysis1.seek 1050ul @21:33:29.64 delay 5 seconds @21:33:34.67 Handoff.select :blocked @21:33:34.94 Lysis1.seek 450ul @21:34:34.95 delay 3 seconds @21:34:38.05 Air.reconfigure to mix into 1.37806 parts Lysis1 @21:34:38.78 Air.seek :evac @21:34:38.83 Lysis1.seek 300ul @21:34:54.02 Air.reconfigure :default @21:34:54.12 Air.seek :full @21:35:08.36 Lysis1.seek :empty @21:35:38.54 Lysis Delivered. Syringe pressure @40.7psi @21:35:38.61 PuckHeater.seek 84.7C @21:36:13.23 PuckHeater.hold 15:00,84.7C @21:51:12.09 Lysis complete. Syringe pressure @43.3psi @21:51:12.11 Handoff.select :blocked @21:51:12.27 Lysis1.reconfigure :halfSpeed @21:51:12.39 Lysis1.seek 200ul @21:51:16.17 delay 1 second @21:51:17.21 Lysis1.seek :empty @21:51:21.08 Initial AirS pressure @46.3psi @21:51:21.21 Lysis1.reconfigure :extract @21:51:21.35 Lysis1.seek 875ul,10:00 @21:51:22.57 Air pumping 10 strokes to reach 21psi @21:51:22.58 Air stroke #1 of 10 @21:51:22.62 Air.reconfigure :pressurize @21:51:22.76 Air.seek :pressurized @21:51:35.66 12.2psi after pressurize @21:51:35.69 Air.reconfigure :compress @21:51:35.82 Air.seek :evac @21:51:38.56 17.8psi after compress @21:51:53.13 15.6psi after compress (stable) @21:51:53.15 Air.reconfigure :gulp @21:51:53.30 Air.seek :tVent @21:52:03.24 15.5psi after gulp @21:52:03.27 Air stroke #2 of 10 @21:52:03.31 Air.reconfigure :pressurize @21:52:04.00 Air.seek :pressurized @21:52:16.89 15.9psi after pressurize @21:52:16.94 Air.reconfigure :compress @21:52:17.06 Air.seek :evac @21:52:19.79 16.6psi after compress @21:52:34.42 15.5psi after compress (stable) @21:52:34.45 Air.reconfigure :gulp @21:52:34.57 Air.seek :tVent @21:52:44.55 14.5psi after gulp @21:52:44.57 Air stroke #3 of 10 @21:52:44.63 Air.reconfigure :pressurize @21:52:44.74 Air.seek :pressurized @21:52:57.64 14.4psi after pressurize @21:52:57.66 Air.reconfigure :compress @21:52:57.79 Air.seek :evac @21:53:00.50 15.9psi after compress @21:53:15.09 15.6psi after compress (stable) @21:53:15.11 Air.reconfigure :gulp @21:53:15.27 Air.seek :tVent @21:53:25.21 16.2psi after gulp @21:53:25.23 Air stroke #4 of 10 @21:53:25.29 Air.reconfigure :pressurize @21:53:25.38 Air.seek :pressurized @21:53:38.29 15.6psi after pressurize @21:53:38.31 Air.reconfigure :compress @21:53:38.43 Air.seek :evac @21:53:41.16 15.8psi after compress @21:53:55.77 15.7psi after compress (stable) @21:53:55.80 Air.reconfigure :gulp @21:53:55.95 Air.seek :tVent @21:54:05.90 15.8psi after gulp @21:54:05.92 Air stroke #5 of 10 @21:54:05.97 Air.reconfigure :pressurize @21:54:06.08 Air.seek :pressurized @21:54:18.97 14.9psi after pressurize @21:54:18.99 Air.reconfigure :compress @21:54:19.12 Air.seek :evac @21:54:22.40 16.4psi after compress @21:54:22.58 Air.reconfigure :default @21:54:22.67 Air.hold @21:54:22.96 Lysis1 at 875ul pressure @16.8psi @21:54:22.99 Lysis1.reconfigure :default @21:54:23.11 Lysis1.seek 900ul @21:54:23.98 Lysis1 at 900ul pressure(finPSI) @12.3psi @21:54:24.00 delay 1 second @21:54:25.19 Lysis1 at 900ul pressure @14.4psi @21:54:25.22 Air.reconfigure :halfSpeed @21:54:25.35 Air.seek :fVent @21:54:27.65 Puck Top Vented. Syringe pressure @2.1psi @21:54:27.67 Handoff.select :waste @21:54:27.85 delay 5 seconds @21:54:32.87 Lysate Recovered in LyS1 @21:54:32.90 Lysis1.reconfigure :DAmix @21:54:33.07 Lysis2.reconfigure :DAmix @21:54:33.59 Lysis1.seek 650ul @21:54:33.72 Lysis2.seek 1450ul @21:55:08.79 delay 5 seconds @21:55:13.84 Handoff.select SPR @21:55:14.00 SPR.command "start 2 14" @21:55:15.59 delay 10 seconds @21:55:25.62 SPR.command "start 1 0" @21:55:28.80 Waiting up to 4:00 for SPR to enter state 1 @21:58:01.87 SPR.command "hold_on" @21:58:03.26 SPR Dilution 1 of 1 -- Running Experiment 1 @21:58:03.90 Lysis1.seek 350ul @21:58:03.94 Lysis2.seek 1150ul @21:58:46.05 volL1 = 300.0 and volL2 = 300.0 @21:58:46.07 delay 15 seconds @21:59:01.10 SPR.command "hold_off" @21:59:03.91 Waiting up to 25:00 for SPR to enter state 7 @22:19:17.80 SPR Analysis has Completed @22:19:17.82 Handoff.select :waste @22:19:18.72 Ended log /var/log/esp/spr19jul1521h.spr @22:19:18.74 SPR.command "stats_off" @22:19:19.27 Handoff.select :close @22:19:19.45
Gate.power :heat,:OFF @22:19:19.47 Gate.power :cartridge,:OFF @22:19:19.60 Carousel.seek 27 @22:19:19.86 Plunge.seek :locked @22:19:20.75 PinPort.seek :clear @22:19:25.42 Archive.seek :clear @22:19:25.63 Air.reconfigure :default @22:19:25.93 Lysis1.reconfigure :default @22:19:26.12 Lysis1.seek :clear @22:19:26.21 Air.seek :clear @22:19:26.34 Lysis2.reconfigure :default @22:19:26.45 Lysis2.seek :clear @22:19:43.41
Archive.coast @22:19:43.49 Air.coast @22:19:43.57 Lysis1.coast @22:19:43.65 Lysis2.coast @22:19:43.73 Plunge.coast @22:19:43.78 SamplePump.coast @22:19:43.88 Toroid.coast @22:19:43.96 Carousel.coast @22:19:44.05 PinPort.coast @22:19:44.30 Gate.power :motor,:OFF @22:19:44.32 Gate.power :core,:OFF @22:19:44.36 Gate.power :analytic1,:OFF @22:19:44.40 Gate.power :analytic2,:OFF @22:19:44.42 Gate.power :analytic3,:OFF @22:19:44.45 Gate.power :main,:OFF @22:19:44.50 Safely stopped and ready to power off @22:19:44.77 delay 30 seconds @22:20:14.90 Gate.power :main,:ON,limit to 5000mA @22:20:14.92 Gate.power :analytic1,:ON,limit to 5000mA @22:20:14.97 Gate.power :analytic2,:ON,limit to 5000mA @22:20:15.00 Gate.power :analytic3,:ON,limit to 5000mA @22:20:15.10 Powering core bus @22:20:17.52 SPR Module 1, FW Rev. B, FPGA Rev. C @22:20:17.97
Archive.configure :default @22:20:18.16 Air.configure :default @22:20:18.32 Lysis1.configure :default @22:20:18.46 Lysis2.configure :default @22:20:18.65 Plunge.configure :default @22:20:18.83 SamplePump.configure :default @22:20:19.01 ExtraPump.configure :default @22:20:19.19 Toroid.configure :default @22:20:19.37 Carousel.configure :default @22:20:19.54 Pressure.configure :default @22:20:19.70 PinPort.configure :default @22:20:19.78 All elf controllers running firmware version 4.58 @22:20:19.82 Gate.power :motor,:ON,limit to 5000mA @22:20:20.21 Archive.reconfigure :default @22:20:20.54 Archive.home.jog 0 @22:20:20.76 PinPort.reconfigure :default @22:20:20.88 Plunge.reconfigure :default @22:20:20.95 Lysis2.reconfigure :default @22:20:21.08 Toroid.reconfigure :default @22:20:21.14 Lysis1.reconfigure :default @22:20:21.24 Air.reconfigure :default @22:20:21.58 Air.home.jog 0 @22:20:21.66 Toroid.home.jog 0 @22:20:21.77 PinPort.home.jog 0 @22:20:21.87 Lysis2.home.jog 0 @22:20:21.97 Plunge.home.jog 0 @22:20:22.08 Lysis1.home.jog 0 @22:20:22.45 Archive.reconfigure :homing @22:20:22.93 Toroid.reconfigure :homing @22:20:23.00 Plunge.reconfigure :homing @22:20:23.04 Lysis2.reconfigure :homing @22:20:23.13 Lysis1.reconfigure :homing @22:20:23.17 PinPort.reconfigure :homing @22:20:23.26 Air.reconfigure :homing @22:20:23.64 Air.jog 1412 @22:20:23.72 Lysis1.jog 1405 @22:20:23.81 Toroid.jog 613 @22:20:23.90 Archive.jog 1352 @22:20:23.98 Plunge.jog 1551 @22:20:24.07 PinPort.jog -108 @22:20:24.26 Lysis2.jog 162 @22:20:24.41 PinPort.setRawPosition! 0 @22:20:24.49 PinPort.seek :home @22:20:24.63 PinPort.reconfigure :default @22:20:24.75 Lysis2.setRawPosition! 50 @22:20:24.83 Lysis2.seek :home @22:20:25.01 Air.setRawPosition! 50 @22:20:25.05 Lysis1.setRawPosition! 50 @22:20:25.15 Air.seek :home @22:20:25.27 Lysis1.seek :home @22:20:25.48 Plunge.setRawPosition! 50 @22:20:25.53 Lysis2.reconfigure :default @22:20:25.58 Archive.setRawPosition! 50 @22:20:25.76 Plunge.seek :home @22:20:25.95 Archive.seek :home @22:20:26.09 Lysis1.reconfigure :default @22:20:26.16 Air.reconfigure :default @22:20:26.22 Toroid.setRawPosition! 0 @22:20:26.40 Toroid.seek :home @22:20:26.63 Toroid.reconfigure :default @22:20:26.68 Plunge.reconfigure :default @22:20:26.72 Archive.reconfigure :default @22:20:27.30
Toroid.seek :clear @22:20:28.96 Carousel.reconfigure :default @22:20:29.06 Carousel.home.jog 0 @22:20:29.61 Carousel.seek 27 @22:20:29.82 Selecting Cartridge 26 @22:20:30.18 Carousel.seek 26 @22:20:30.75 Lysis1.seek :locked @22:20:34.95 Plunge.seek :locked @22:20:35.15 Air.seek :locked @22:20:39.33
Powering cartridge bus @22:20:41.47 Gate.setIR 1750,5000,0,6 @22:20:41.60 Gate.setIR 0,5000,0,6 @22:20:41.69 Loaded Lyse-n-Go Cartridge @22:20:41.70 PuckHeater.configure HeatConfig @22:20:41.80 Gate.power :heat,:ON,limit to 5000mA @22:20:42.66 Duration of filtering limited to 2:05:00 @22:20:43.04 Priming sample loop w/100ml, bypass w/10ml @22:20:43.06 SamplePump.setPosition! 0ml @22:20:43.15 Bypass.open @22:20:44.70 Intake.open @22:20:44.96 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @22:20:47.99 Vacuum tare is 51% of full scale @22:20:48.19 Pressure.reconfigure :default @22:20:48.29 Pressure.hold @22:20:48.56 SamplePump.reconfigure :prime @22:20:48.67 SamplePump.seek 10ml,1:10 @22:20:57.66 Pressure.coast @22:20:57.75 SamplePump.setPosition! 0ml @22:20:57.83 Exhaust.open @22:20:59.26 Bypass.close @22:21:00.90 Pressure.reconfigure :default @22:21:01.00 Pressure.hold @22:21:01.33 SamplePump.reconfigure :prime @22:21:01.45 SamplePump.seek 100ml,7:10 @22:22:49.43 Pressure.coast @22:22:49.53 Bypass.open @22:22:50.30 Intake.close @22:22:51.18 Toroid.reconfigure :hold @22:22:51.29 Toroid.seek :crack @22:22:52.13 Toroid.reconfigure :default @22:22:52.23 Toroid.seek :clear @22:22:53.87 Toroid.reconfigure :hold @22:22:53.97 Toroid.seek :cartridge @22:22:55.82 Toroid.reconfigure :default @22:22:55.92 Toroid.seek :clear @22:22:58.00 Pressurizing cartridge to 14psi above 14.7psia @22:22:58.02 SamplePump.setPosition! 0ml @22:22:58.11 Intake.open @22:22:58.39 Bypass.close @22:22:59.14 Exhaust.close @22:23:00.02 Pressure.reconfigure :default @22:23:00.11 Pressure.hold @22:23:00.38 SamplePump.reconfigure :charge @22:23:00.49 SamplePump.seek 2.3ml,41 seconds @22:23:13.95 Pressure.coast @22:23:14.04 Intake.close @22:23:14.88 Pressurized cartridge with 0.845ml to 14.2psi @22:23:14.89 Isolated @29.5psia (14.8psi) @22:23:14.92 Checking for cartridge leaks from 29.5psia @22:23:14.98 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @22:23:20.96 Cartridge pressure fell 6% to 27.6psia @22:23:21.10 Sampling 1000.0ml @22:23:21.11 SamplePump.setPosition! 0ml @22:23:21.21 Exhaust.open @22:23:21.93 Intake.open @22:23:22.35 Pressure.reconfigure :default @22:23:22.45 Pressure.hold @22:23:22.81 SamplePump.reconfigure :sample @22:23:22.93 SamplePump.seek 1000ml,1:07:09 @22:23:25.41 Cartridge 26 sampling 1/1000ml at 0.46ml/s with 15.1psi vacuum @22:24:25.43 Cartridge 26 sampling 28/1000ml at 0.44ml/s with 13.5psi vacuum 1.6m deep (17.1psia) @22:25:25.43 Cartridge 26 sampling 54/1000ml at 0.44ml/s with 13.4psi vacuum 1.6m deep (17.1psia) @22:26:25.44 Cartridge 26 sampling 80/1000ml at 0.42ml/s with 11.7psi vacuum 2.0m deep (17.7psia) @22:27:25.92 Cartridge 26 sampling 105/1000ml at 0.42ml/s with 13.9psi vacuum @22:28:25.43 Cartridge 26 sampling 131/1000ml at 0.42ml/s with 11.4psi vacuum 2.5m deep (18.4psia) @22:29:25.44 Cartridge 26 sampling 156/1000ml at 0.43ml/s with 14.6psi vacuum @22:30:25.43 Cartridge 26 sampling 181/1000ml at 0.43ml/s with 14.4psi vacuum @22:31:25.43 Cartridge 26 sampling 207/1000ml at 0.41ml/s with 14.8psi vacuum @22:32:25.43 Cartridge 26 sampling 232/1000ml at 0.43ml/s with 14.7psi vacuum @22:33:25.43 Cartridge 26 sampling 258/1000ml at 0.42ml/s with 14.6psi vacuum @22:34:25.44 Cartridge 26 sampling 283/1000ml at 0.42ml/s with 11.9psi vacuum 1.9m deep (17.5psia) @22:35:25.44 Cartridge 26 sampling 308/1000ml at 0.42ml/s with 14.4psi vacuum @22:36:25.42 Cartridge 26 sampling 333/1000ml at 0.42ml/s with 12.7psi vacuum 2.1m deep (17.9psia) @22:37:25.43 Cartridge 26 sampling 358/1000ml at 0.41ml/s with 13.0psi vacuum 2.3m deep (18.2psia) @22:38:25.42 Cartridge 26 sampling 382/1000ml at 0.41ml/s with 13.1psi vacuum 2.6m deep (18.6psia) @22:39:25.43 Cartridge 26 sampling 406/1000ml at 0.39ml/s with 15.0psi vacuum @22:40:25.43 Cartridge 26 sampling 430/1000ml at 0.40ml/s with 14.6psi vacuum 1.7m deep (17.3psia) @22:41:25.43 Cartridge 26 sampling 453/1000ml at 0.38ml/s with 15.2psi vacuum @22:42:25.43 Cartridge 26 sampling 476/1000ml at 0.38ml/s with 12.3psi vacuum 1.7m deep (17.2psia) @22:43:25.44 Cartridge 26 sampling 498/1000ml at 0.36ml/s with 15.2psi vacuum @22:44:25.43 Cartridge 26 sampling 521/1000ml at 0.37ml/s with 13.8psi vacuum 1.7m deep (17.2psia) @22:45:25.43 Cartridge 26 sampling 542/1000ml at 0.37ml/s with 14.8psi vacuum @22:46:25.43 Cartridge 26 sampling 564/1000ml at 0.36ml/s with 13.6psi vacuum 2.3m deep (18.1psia) @22:47:25.43 Cartridge 26 sampling 585/1000ml at 0.35ml/s with 11.5psi vacuum 1.9m deep (17.6psia) @22:48:25.44 Cartridge 26 sampling 606/1000ml at 0.35ml/s with 11.8psi vacuum 2.9m deep (19.0psia) @22:49:25.43 Cartridge 26 sampling 627/1000ml at 0.34ml/s with 13.1psi vacuum 2.1m deep (17.8psia) @22:50:25.44 Cartridge 26 sampling 647/1000ml at 0.34ml/s with 12.8psi vacuum 2.3m deep (18.0psia) @22:51:25.44 Cartridge 26 sampling 667/1000ml at 0.32ml/s with 15.1psi vacuum @22:52:25.43 Cartridge 26 sampling 687/1000ml at 0.31ml/s with 13.6psi vacuum @22:53:25.43 Cartridge 26 sampling 706/1000ml at 0.34ml/s with 13.3psi vacuum 2.0m deep (17.6psia) @22:54:25.44 Cartridge 26 sampling 725/1000ml at 0.31ml/s with 10.5psi vacuum 3.2m deep (19.5psia) @22:55:25.43 Cartridge 26 sampling 744/1000ml at 0.30ml/s with 10.2psi vacuum 3.2m deep (19.5psia) @22:56:25.42 Cartridge 26 sampling 763/1000ml at 0.31ml/s with 13.0psi vacuum 2.1m deep (17.7psia) @22:57:25.43 Cartridge 26 sampling 781/1000ml at 0.29ml/s with 15.3psi vacuum @22:58:25.42 Cartridge 26 sampling 799/1000ml at 0.28ml/s with 9.3psi vacuum 4.1m deep (20.8psia) @22:59:25.43 Cartridge 26 sampling 817/1000ml at 0.32ml/s with 14.3psi vacuum 2.0m deep (17.6psia) @23:00:25.43 Cartridge 26 sampling 835/1000ml at 0.29ml/s with 12.4psi vacuum @23:01:25.44 Cartridge 26 sampling 852/1000ml at 0.27ml/s with 10.6psi vacuum 2.4m deep (18.2psia) @23:02:25.44 Cartridge 26 sampling 869/1000ml at 0.27ml/s with 14.4psi vacuum @23:03:25.43 Cartridge 26 sampling 885/1000ml at 0.26ml/s with 14.3psi vacuum @23:04:25.43 Cartridge 26 sampling 901/1000ml at 0.28ml/s with 13.7psi vacuum @23:05:25.42 Cartridge 26 sampling 918/1000ml at 0.26ml/s with 9.6psi vacuum 4.2m deep (20.9psia) @23:06:25.42 Cartridge 26 sampling 934/1000ml at 0.27ml/s with 13.7psi vacuum 2.0m deep (17.7psia) @23:07:25.42 Cartridge 26 sampling 949/1000ml at 0.25ml/s with 14.4psi vacuum @23:08:25.43 Cartridge 26 sampling 965/1000ml at 0.25ml/s with 14.8psi vacuum 1.7m deep (17.3psia) @23:09:25.42 Cartridge 26 sampling 980/1000ml at 0.27ml/s with 14.5psi vacuum 1.9m deep (17.6psia) @23:10:25.42 Cartridge 26 sampling 996/1000ml at 0.25ml/s with 15.1psi vacuum @23:10:40.77 Pressure.coast @23:10:40.97 Intake.close @23:10:41.02 Exhaust.close @23:10:41.32 Toroid.reconfigure :hold @23:10:41.43 Toroid.seek :bypass @23:10:43.09 Toroid.reconfigure :default @23:10:43.20 Toroid.seek :clear @23:10:44.87 Sampled 1000.0ml @23:10:46.97 SPR.command "read_sequences" @23:10:47.76 SPR.command "stats_on" @23:10:47.83 SPR.command "start 0 1" @23:10:49.84 Begun log /var/log/esp/spr19jul1523h.spr @23:10:50.60 Handoff.select :waste @23:10:50.82 Archive.seek :empty @23:10:58.99 Syringe tare is 19% of full scale @23:11:08.68 PinPort.seek :cartridge @23:11:13.28 Lysis1.seek 1350ul @23:11:15.80 Lysis2.seek 1700ul @23:11:18.95 Plunge.seek :reagent @23:11:19.82 Evacuating puck with filter bubble point of 30psi @23:11:19.84 PinPort.seek :cartridge @23:11:19.99 Handoff.select :waste @23:11:27.71 Air pumping 1 strokes to reach 4psi @23:11:27.73 Air.reconfigure :gulp @23:11:27.85 Air.seek :tVent @23:11:29.71 0.1psi after gulp @23:11:29.72 Air stroke #1 of 1 @23:11:29.78 Air.reconfigure :pressurize @23:11:29.93 Air.seek :pressurized @23:11:42.83 0.0psi after pressurize @23:11:42.86 Air.reconfigure :compress @23:11:42.97 Air.seek :evac @23:11:45.71 0.2psi after compress @23:12:00.31 0.2psi after compress (stable) @23:12:00.50 at 0.2psi Opened to waste @23:12:00.52 Handoff.select :blocked @23:12:00.75 Air pumping 10 strokes to reach 30psi @23:12:00.79 Air.reconfigure :gulp @23:12:00.91 Air.seek :tVent @23:12:10.86 4.3psi after gulp @23:12:10.89 Air stroke #1 of 10 @23:12:10.94 Air.reconfigure :pressurize @23:12:11.05 Air.seek :pressurized @23:12:23.95 7.2psi after pressurize @23:12:23.99 Air.reconfigure :compress @23:12:24.12 Air.seek :evac @23:12:26.82 8.1psi after compress @23:13:01.29 Reached 30.0 of 30.0psi after pumping 3115ul (2.00 strokes) @23:13:01.30 Handoff.select :waste @23:13:10.22 delay 1:00 @23:14:10.25 Handoff.select :blocked @23:14:36.54 Handoff.select :waste @23:14:36.70 PSI at @1.96psi at evacEnd @23:14:36.72 Handoff.select :blocked @23:14:36.90 Air.reconfigure :gulp @23:14:37.02 Air.seek :tVent @23:14:54.50 Stable @2.4psi after Handoff blocked @23:14:54.64 Air pumping 10 strokes to reach 27psi @23:14:54.66 Air stroke #1 of 10 @23:14:54.70 Air.reconfigure :pressurize @23:14:54.86 Air.seek :pressurized @23:15:07.76 3.1psi after pressurize @23:15:07.80 Air.reconfigure :compress @23:15:07.92 Air.seek :evac @23:15:11.23 3.4psi after compress @23:16:18.69 19.6psi after compress (stable) @23:16:18.72 Air.reconfigure :gulp @23:16:18.85 Air.seek :tVent @23:16:28.84 21.2psi after gulp @23:16:28.85 Air stroke #2 of 10 @23:16:28.92 Air.reconfigure :pressurize @23:16:29.03 Air.seek :pressurized @23:16:42.49 20.1psi after pressurize @23:16:42.52 Air.reconfigure :compress @23:16:42.65 Air.seek :evac @23:16:45.38 19.4psi after compress @23:17:07.73 Reached 27.4 of 27.4psi after pumping 4672ul (3.00 strokes) @23:17:07.75 I'm just before the explosive evac @23:17:07.77 Handoff.select :waste @23:17:26.55 delay 1:00 @23:18:26.57 Handoff.select :blocked @23:18:53.50 Handoff.select :waste @23:18:53.65 PSI at @2.87psi at evacEnd @23:18:53.69 Air.reconfigure :default @23:18:53.80 Air.seek :fVent @23:18:55.28 delay 5 seconds @23:19:00.32 Seawater evacuated, Presure above/below filter released. Lysis begins @23:19:00.44 Lysis1.reconfigure :slow @23:19:00.55 Lysis1.seek 1050ul @23:19:30.63 delay 5 seconds @23:19:35.65 Handoff.select :blocked @23:19:35.87 Lysis1.seek 450ul @23:20:35.90 delay 3 seconds @23:20:39.02 Air.reconfigure to mix into 1.37806 parts Lysis1 @23:20:39.67 Air.seek :evac @23:20:39.73 Lysis1.seek 300ul @23:20:54.94 Air.reconfigure :default @23:20:55.05 Air.seek :full @23:21:09.30 Lysis1.seek :empty @23:21:39.47 Lysis Delivered. Syringe pressure @39.5psi @23:21:39.55 PuckHeater.seek 84.7C @23:22:16.29 PuckHeater.hold 15:00,84.7C @23:37:15.69 Lysis complete. Syringe pressure @45.3psi @23:37:15.71 Handoff.select :blocked @23:37:15.87 Lysis1.reconfigure :halfSpeed @23:37:15.97 Lysis1.seek 200ul @23:37:19.76 delay 1 second @23:37:20.80 Lysis1.seek :empty @23:37:24.68 Initial AirS pressure @46.5psi @23:37:24.77 Lysis1.reconfigure :extract @23:37:24.98 Lysis1.seek 875ul,10:00 @23:37:26.21 Air pumping 10 strokes to reach 21psi @23:37:26.22 Air stroke #1 of 10 @23:37:26.29 Air.reconfigure :pressurize @23:37:26.40 Air.seek :pressurized @23:37:39.29 15.1psi after pressurize @23:37:39.31 Air.reconfigure :compress @23:37:39.44 Air.seek :evac @23:37:42.17 19.1psi after compress @23:37:56.78 15.7psi after compress (stable) @23:37:56.80 Air.reconfigure :gulp @23:37:56.92 Air.seek :tVent @23:38:07.45 15.9psi after gulp @23:38:07.46 Air stroke #2 of 10 @23:38:07.48 Air.reconfigure :pressurize @23:38:07.64 Air.seek :pressurized @23:38:20.54 15.9psi after pressurize @23:38:20.59 Air.reconfigure :compress @23:38:20.71 Air.seek :evac @23:38:23.44 17.2psi after compress @23:38:38.11 15.8psi after compress (stable) @23:38:38.14 Air.reconfigure :gulp @23:38:38.26 Air.seek :tVent @23:38:48.21 15.7psi after gulp @23:38:48.23 Air stroke #3 of 10 @23:38:48.28 Air.reconfigure :pressurize @23:38:48.39 Air.seek :pressurized @23:39:01.28 15.5psi after pressurize @23:39:01.32 Air.reconfigure :compress @23:39:01.44 Air.seek :evac @23:39:04.19 15.4psi after compress @23:39:18.85 15.8psi after compress (stable) @23:39:18.87 Air.reconfigure :gulp @23:39:19.00 Air.seek :tVent @23:39:28.94 15.5psi after gulp @23:39:28.96 Air stroke #4 of 10 @23:39:29.00 Air.reconfigure :pressurize @23:39:29.14 Air.seek :pressurized @23:39:42.06 15.1psi after pressurize @23:39:42.08 Air.reconfigure :compress @23:39:42.21 Air.seek :evac @23:39:44.93 16.0psi after compress @23:39:45.79 Air.reconfigure :default @23:39:45.88 Air.hold @23:39:46.15 Lysis1 at 875ul pressure @15.1psi @23:39:46.18 Lysis1.reconfigure :default @23:39:46.29 Lysis1.seek 900ul @23:39:47.14 Lysis1 at 900ul pressure(finPSI) @11.5psi @23:39:47.18 delay 1 second @23:39:48.36 Lysis1 at 900ul pressure @13.5psi @23:39:48.39 Air.reconfigure :halfSpeed @23:39:48.51 Air.seek :fVent @23:39:50.82 Puck Top Vented. Syringe pressure @2.2psi @23:39:50.85 Handoff.select :waste @23:39:51.00 delay 5 seconds @23:39:56.03 Lysate Recovered in LyS1 @23:39:56.05 Lysis1.reconfigure :DAmix @23:39:56.26 Lysis2.reconfigure :DAmix @23:39:56.96 Lysis1.seek 650ul @23:39:57.00 Lysis2.seek 1450ul @23:40:32.18 delay 5 seconds @23:40:37.20 Handoff.select SPR @23:40:37.35 SPR.command "start 2 14" @23:40:38.39 delay 10 seconds @23:40:48.43 SPR.command "start 1 0" @23:40:51.59 Waiting up to 4:00 for SPR to enter state 1 @23:43:24.27 SPR.command "hold_on" @23:43:25.64 SPR Dilution 1 of 1 -- Running Experiment 1 @23:43:26.27 Lysis1.seek 350ul @23:43:26.38 Lysis2.seek 1150ul @23:44:08.43 volL1 = 300.0 and volL2 = 300.0 @23:44:08.44 delay 15 seconds @23:44:23.50 SPR.command "hold_off" @23:44:26.29 Waiting up to 25:00 for SPR to enter state 7 @00:04:40.18PDT16-Jul-19 SPR Analysis has Completed @00:04:40.21 Handoff.select :waste @00:04:41.11 Ended log /var/log/esp/spr19jul1523h.spr @00:04:41.13 SPR.command "stats_off" @00:04:41.65 Handoff.select :close @00:04:41.83
Gate.power :heat,:OFF @00:04:41.85 Gate.power :cartridge,:OFF @00:04:41.97 Carousel.seek 26 @00:04:42.24 Plunge.seek :locked @00:04:43.11 PinPort.seek :clear @00:04:47.79 Archive.seek :clear @00:04:47.99 Air.reconfigure :default @00:04:48.25 Lysis1.reconfigure :default @00:04:48.37 Lysis1.seek :clear @00:04:48.47 Air.seek :clear @00:04:48.62 Lysis2.reconfigure :default @00:04:48.72 Lysis2.seek :clear @00:05:05.67
Archive.coast @00:05:05.75 Air.coast @00:05:05.83 Lysis1.coast @00:05:05.91 Lysis2.coast @00:05:05.99 Plunge.coast @00:05:06.07 SamplePump.coast @00:05:06.14 Toroid.coast @00:05:06.23 Carousel.coast @00:05:06.31 PinPort.coast @00:05:06.54 Gate.power :motor,:OFF @00:05:06.56 Gate.power :core,:OFF @00:05:06.60 Gate.power :analytic1,:OFF @00:05:06.64 Gate.power :analytic2,:OFF @00:05:06.67 Gate.power :analytic3,:OFF @00:05:06.71 Gate.power :main,:OFF @00:05:06.75 Safely stopped and ready to power off @00:05:07.15 delay 30 seconds @00:05:37.29 Gate.power :main,:ON,limit to 5000mA @00:05:37.31 Gate.power :analytic1,:ON,limit to 5000mA @00:05:37.37 Gate.power :analytic2,:ON,limit to 5000mA @00:05:37.39 Gate.power :analytic3,:ON,limit to 5000mA @00:05:37.50 Powering core bus @00:05:40.55 Archive.configure :default @00:05:40.77 SPR Module 1, FW Rev. B, FPGA Rev. C @00:05:40.79
Air.configure :default @00:05:40.97 Lysis1.configure :default @00:05:41.12 Lysis2.configure :default @00:05:41.31 Plunge.configure :default @00:05:41.49 SamplePump.configure :default @00:05:41.67 ExtraPump.configure :default @00:05:41.85 Toroid.configure :default @00:05:42.01 Carousel.configure :default @00:05:42.19 Pressure.configure :default @00:05:42.36 PinPort.configure :default @00:05:42.45 All elf controllers running firmware version 4.58 @00:05:42.48 Gate.power :motor,:ON,limit to 5000mA @00:05:42.98 Lysis2.reconfigure :default @00:05:43.06 Air.reconfigure :default @00:05:43.26 Archive.reconfigure :default @00:05:43.43 Lysis2.home.jog 0 @00:05:43.52 Air.home.jog 0 @00:05:43.61 Archive.home.jog 0 @00:05:43.91 Toroid.reconfigure :default @00:05:43.99 Plunge.reconfigure :default @00:05:44.06 Lysis1.reconfigure :default @00:05:44.12 PinPort.reconfigure :default @00:05:44.50 Plunge.home.jog 0 @00:05:44.59 Toroid.home.jog 0 @00:05:44.69 PinPort.home.jog 0 @00:05:44.80 Lysis1.home.jog 0 @00:05:45.14 Lysis2.reconfigure :homing @00:05:45.19 Air.reconfigure :homing @00:05:45.39 Archive.reconfigure :homing @00:05:45.62 Archive.jog 1353 @00:05:45.72 Air.jog 1415 @00:05:45.81 Lysis2.jog 163 @00:05:46.00 PinPort.reconfigure :homing @00:05:46.06 Toroid.reconfigure :homing @00:05:46.11 Lysis1.reconfigure :homing @00:05:46.20 Plunge.reconfigure :homing @00:05:46.46 PinPort.jog -108 @00:05:46.56 Lysis1.jog 1405 @00:05:46.65 Toroid.jog 619 @00:05:46.77 Plunge.jog 1544 @00:05:46.92 PinPort.setRawPosition! 0 @00:05:46.96 Lysis2.setRawPosition! 50 @00:05:47.01 Air.setRawPosition! 50 @00:05:47.05 Archive.setRawPosition! 50 @00:05:47.23 PinPort.seek :home @00:05:47.32 Lysis2.seek :home @00:05:47.39 Air.seek :home @00:05:47.45 Archive.seek :home @00:05:47.83 Lysis1.setRawPosition! 50 @00:05:47.86 PinPort.reconfigure :default @00:05:48.05 Lysis1.seek :home @00:05:48.20 Plunge.setRawPosition! 50 @00:05:48.26 Lysis2.reconfigure :default @00:05:48.29 Archive.reconfigure :default @00:05:48.36 Air.reconfigure :default @00:05:48.57 Plunge.seek :home @00:05:48.83 Toroid.setRawPosition! 0 @00:05:48.86 Lysis1.reconfigure :default @00:05:49.00 Toroid.seek :home @00:05:49.26 Plunge.reconfigure :default @00:05:49.29 Toroid.reconfigure :default @00:05:49.65
Toroid.seek :clear @00:05:51.30 Carousel.reconfigure :default @00:05:51.40 Carousel.home.jog 0 @00:05:51.94 Carousel.seek 26 @00:05:52.13 Selecting Cartridge 25 @00:05:52.49 Carousel.seek 25 @00:05:53.06 Lysis1.seek :locked @00:05:57.27 Plunge.seek :locked @00:05:57.47 Air.seek :locked @00:06:01.67
Powering cartridge bus @00:06:03.82 Gate.setIR 1750,5000,0,6 @00:06:03.96 Gate.setIR 0,5000,0,6 @00:06:04.04 Loaded Lyse-n-Go Cartridge @00:06:04.06 PuckHeater.configure HeatConfig @00:06:04.14 Gate.power :heat,:ON,limit to 5000mA @00:06:05.00 Duration of filtering limited to 2:05:00 @00:06:05.37 Priming sample loop w/100ml, bypass w/10ml @00:06:05.39 SamplePump.setPosition! 0ml @00:06:05.49 Bypass.open @00:06:07.01 Intake.open @00:06:07.45 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @00:06:10.47 Vacuum tare is 51% of full scale @00:06:10.67 Pressure.reconfigure :default @00:06:10.77 Pressure.hold @00:06:11.04 SamplePump.reconfigure :prime @00:06:11.15 SamplePump.seek 10ml,1:10 @00:06:20.13 Pressure.coast @00:06:20.22 SamplePump.setPosition! 0ml @00:06:20.31 Exhaust.open @00:06:21.76 Bypass.close @00:06:23.38 Pressure.reconfigure :default @00:06:23.47 Pressure.hold @00:06:23.81 SamplePump.reconfigure :prime @00:06:23.92 SamplePump.seek 100ml,7:10 @00:08:11.11 Pressure.coast @00:08:11.21 Bypass.open @00:08:11.97 Intake.close @00:08:12.83 Toroid.reconfigure :hold @00:08:12.93 Toroid.seek :crack @00:08:13.79 Toroid.reconfigure :default @00:08:13.89 Toroid.seek :clear @00:08:15.52 Toroid.reconfigure :hold @00:08:15.63 Toroid.seek :cartridge @00:08:17.48 Toroid.reconfigure :default @00:08:17.58 Toroid.seek :clear @00:08:19.67 Pressurizing cartridge to 14psi above 14.8psia @00:08:19.69 SamplePump.setPosition! 0ml @00:08:19.78 Intake.open @00:08:20.17 Bypass.close @00:08:20.91 Exhaust.close @00:08:21.80 Pressure.reconfigure :default @00:08:21.89 Pressure.hold @00:08:22.15 SamplePump.reconfigure :charge @00:08:22.28 SamplePump.seek 2.3ml,41 seconds @00:08:36.49 Pressure.coast @00:08:36.58 Intake.close @00:08:37.45 Pressurized cartridge with 0.944ml to 14.4psi @00:08:37.46 Isolated @30.2psia (15.4psi) @00:08:37.49 Checking for cartridge leaks from 30.2psia @00:08:37.56 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @00:08:42.98 Sampling 1000.0ml @00:08:42.99 SamplePump.setPosition! 0ml @00:08:43.10 Exhaust.open @00:08:43.85 Intake.open @00:08:44.39 Pressure.reconfigure :default @00:08:44.54 Pressure.hold @00:08:44.90 SamplePump.reconfigure :sample @00:08:45.02 SamplePump.seek 1000ml,1:07:09 @00:08:47.43 Cartridge 25 sampling 1/1000ml at 0.49ml/s with 13.6psi vacuum 2.7m deep (18.7psia) @00:09:47.43 Cartridge 25 sampling 27/1000ml at 0.44ml/s with 13.9psi vacuum @00:10:47.42 Cartridge 25 sampling 53/1000ml at 0.44ml/s with 8.3psi vacuum 4.4m deep (21.3psia) @00:11:47.41 Cartridge 25 sampling 79/1000ml at 0.44ml/s with 14.4psi vacuum 2.0m deep (17.6psia) @00:12:47.41 Cartridge 25 sampling 105/1000ml at 0.41ml/s with 12.3psi vacuum 1.9m deep (17.5psia) @00:13:47.93 Cartridge 25 sampling 130/1000ml at 0.43ml/s with 11.7psi vacuum 2.6m deep (18.6psia) @00:14:47.42 Cartridge 25 sampling 156/1000ml at 0.40ml/s with 15.2psi vacuum @00:15:47.41 Cartridge 25 sampling 181/1000ml at 0.42ml/s with 12.4psi vacuum 2.7m deep (18.7psia) @00:16:47.43 Cartridge 25 sampling 206/1000ml at 0.41ml/s with 15.2psi vacuum @00:17:47.41 Cartridge 25 sampling 232/1000ml at 0.43ml/s with 15.1psi vacuum 1.7m deep (17.2psia) @00:18:47.42 Cartridge 25 sampling 257/1000ml at 0.43ml/s with 12.0psi vacuum 2.3m deep (18.1psia) @00:19:47.42 Cartridge 25 sampling 282/1000ml at 0.42ml/s with 15.4psi vacuum @00:20:47.43 Cartridge 25 sampling 307/1000ml at 0.42ml/s with 15.1psi vacuum @00:21:47.41 Cartridge 25 sampling 332/1000ml at 0.40ml/s with 15.6psi vacuum @00:22:47.42 Cartridge 25 sampling 357/1000ml at 0.39ml/s with 11.3psi vacuum 2.8m deep (18.9psia) @00:23:47.43 Cartridge 25 sampling 381/1000ml at 0.41ml/s with 13.5psi vacuum 2.3m deep (18.0psia) @00:24:47.41 Cartridge 25 sampling 405/1000ml at 0.41ml/s with 9.3psi vacuum 5.7m deep (23.1psia) @00:25:47.41 Cartridge 25 sampling 429/1000ml at 0.38ml/s with 15.2psi vacuum 1.8m deep (17.4psia) @00:26:47.43 Cartridge 25 sampling 452/1000ml at 0.40ml/s with 10.1psi vacuum 3.8m deep (20.3psia) @00:27:47.41 Cartridge 25 sampling 475/1000ml at 0.38ml/s with 10.4psi vacuum 3.7m deep (20.1psia) @00:28:47.43 Cartridge 25 sampling 497/1000ml at 0.36ml/s with 15.1psi vacuum 1.6m deep (17.0psia) @00:29:47.42 Cartridge 25 sampling 520/1000ml at 0.36ml/s with 15.5psi vacuum @00:30:47.43 Cartridge 25 sampling 541/1000ml at 0.37ml/s with 13.5psi vacuum @00:31:47.41 Cartridge 25 sampling 563/1000ml at 0.36ml/s with 15.0psi vacuum 2.0m deep (17.6psia) @00:32:47.41 Cartridge 25 sampling 584/1000ml at 0.35ml/s with 12.3psi vacuum @00:33:47.43 Cartridge 25 sampling 605/1000ml at 0.35ml/s with 14.8psi vacuum 1.8m deep (17.4psia) @00:34:47.42 Cartridge 25 sampling 625/1000ml at 0.33ml/s with 11.5psi vacuum 2.8m deep (18.9psia) @00:35:47.43 Cartridge 25 sampling 645/1000ml at 0.32ml/s with 11.7psi vacuum 3.1m deep (19.2psia) @00:36:47.41 Cartridge 25 sampling 665/1000ml at 0.32ml/s with 10.0psi vacuum 2.8m deep (18.9psia) @00:37:47.41 Cartridge 25 sampling 684/1000ml at 0.33ml/s with 14.7psi vacuum 1.9m deep (17.5psia) @00:38:47.41 Cartridge 25 sampling 704/1000ml at 0.32ml/s with 11.9psi vacuum 2.9m deep (19.0psia) @00:39:47.43 Cartridge 25 sampling 723/1000ml at 0.31ml/s with 11.3psi vacuum 3.3m deep (19.5psia) @00:40:47.42 Cartridge 25 sampling 741/1000ml at 0.28ml/s with 15.5psi vacuum @00:41:47.41 Cartridge 25 sampling 759/1000ml at 0.30ml/s with 14.0psi vacuum 1.9m deep (17.5psia) @00:42:47.41 Cartridge 25 sampling 777/1000ml at 0.27ml/s with 15.5psi vacuum @00:43:47.42 Cartridge 25 sampling 794/1000ml at 0.26ml/s with 15.1psi vacuum @00:44:47.42 Cartridge 25 sampling 811/1000ml at 0.29ml/s with 14.9psi vacuum 2.2m deep (17.9psia) @00:45:47.43 Cartridge 25 sampling 829/1000ml at 0.29ml/s with 15.1psi vacuum 2.3m deep (18.1psia) @00:46:47.43 Cartridge 25 sampling 846/1000ml at 0.27ml/s with 10.1psi vacuum 2.9m deep (18.9psia) @00:47:47.40 Cartridge 25 sampling 863/1000ml at 0.28ml/s with 14.7psi vacuum @00:48:47.42 Cartridge 25 sampling 880/1000ml at 0.27ml/s with 8.6psi vacuum 4.1m deep (20.7psia) @00:49:47.42 Cartridge 25 sampling 896/1000ml at 0.27ml/s with 8.7psi vacuum 3.8m deep (20.3psia) @00:50:47.42 Cartridge 25 sampling 912/1000ml at 0.25ml/s with 15.1psi vacuum @00:51:47.43 Cartridge 25 sampling 928/1000ml at 0.28ml/s with 11.7psi vacuum 2.9m deep (19.0psia) @00:52:47.41 Cartridge 25 sampling 944/1000ml at 0.27ml/s with 13.3psi vacuum 3.0m deep (19.2psia) @00:53:47.41 Cartridge 25 sampling 960/1000ml at 0.27ml/s with 9.1psi vacuum 4.0m deep (20.6psia) @00:54:47.43 Cartridge 25 sampling 976/1000ml at 0.27ml/s with 9.4psi vacuum 3.4m deep (19.8psia) @00:55:47.41 Cartridge 25 sampling 992/1000ml at 0.27ml/s with 13.8psi vacuum 2.9m deep (19.0psia) @00:56:18.69 Pressure.coast @00:56:18.89 Intake.close @00:56:18.96 Exhaust.close @00:56:19.19 Toroid.reconfigure :hold @00:56:19.30 Toroid.seek :bypass @00:56:20.95 Toroid.reconfigure :default @00:56:21.06 Toroid.seek :clear @00:56:22.72 Sampled 1000.0ml @00:56:24.80 SPR.command "read_sequences" @00:56:25.28 SPR.command "stats_on" @00:56:25.35 SPR.command "start 0 1" @00:56:27.36 Begun log /var/log/esp/spr19jul1600h.spr @00:56:28.14 Handoff.select :waste @00:56:28.39 Archive.seek :empty @00:56:36.54 Syringe tare is 19% of full scale @00:56:46.21 PinPort.seek :cartridge @00:56:50.81 Lysis1.seek 1350ul @00:56:53.34 Lysis2.seek 1700ul @00:56:56.50 Plunge.seek :reagent @00:56:57.37 Evacuating puck with filter bubble point of 30psi @00:56:57.39 PinPort.seek :cartridge @00:56:57.54 Handoff.select :waste @00:57:05.26 Air pumping 1 strokes to reach 4psi @00:57:05.28 Air.reconfigure :gulp @00:57:05.41 Air.seek :tVent @00:57:07.27 0.2psi after gulp @00:57:07.28 Air stroke #1 of 1 @00:57:07.33 Air.reconfigure :pressurize @00:57:07.47 Air.seek :pressurized @00:57:20.37 0.1psi after pressurize @00:57:20.40 Air.reconfigure :compress @00:57:20.52 Air.seek :evac @00:57:23.25 0.3psi after compress @00:57:37.85 0.1psi after compress (stable) @00:57:38.04 at 0.1psi Opened to waste @00:57:38.06 Handoff.select :blocked @00:57:38.29 Air pumping 10 strokes to reach 30psi @00:57:38.33 Air.reconfigure :gulp @00:57:38.45 Air.seek :tVent @00:57:48.40 8.7psi after gulp @00:57:48.43 Air stroke #1 of 10 @00:57:48.48 Air.reconfigure :pressurize @00:57:48.59 Air.seek :pressurized @00:58:01.52 11.9psi after pressurize @00:58:01.55 Air.reconfigure :compress @00:58:01.68 Air.seek :evac @00:58:04.40 13.7psi after compress @00:58:12.52 Reached 30.1 of 30.0psi after pumping 3115ul (2.00 strokes) @00:58:12.54 Handoff.select :waste @00:58:23.80 delay 1:00 @00:59:24.37 Handoff.select :blocked @00:59:50.78 Handoff.select :waste @00:59:50.93 PSI at @2.39psi at evacEnd @00:59:50.95 Handoff.select :blocked @00:59:51.13 Air.reconfigure :gulp @00:59:51.23 Air.seek :tVent @01:00:08.73 Stable @2.9psi after Handoff blocked @01:00:08.86 Air pumping 10 strokes to reach 28psi @01:00:08.89 Air stroke #1 of 10 @01:00:08.93 Air.reconfigure :pressurize @01:00:09.07 Air.seek :pressurized @01:00:21.98 3.8psi after pressurize @01:00:22.00 Air.reconfigure :compress @01:00:22.13 Air.seek :evac @01:00:24.86 4.2psi after compress @01:01:17.76 22.3psi after compress (stable) @01:01:17.79 Air.reconfigure :gulp @01:01:17.92 Air.seek :tVent @01:01:27.88 23.5psi after gulp @01:01:27.89 Air stroke #2 of 10 @01:01:27.94 Air.reconfigure :pressurize @01:01:28.05 Air.seek :pressurized @01:01:40.95 21.5psi after pressurize @01:01:40.99 Air.reconfigure :compress @01:01:41.14 Air.seek :evac @01:01:43.90 21.0psi after compress @01:01:55.47 Reached 28.0 of 27.9psi after pumping 4672ul (3.00 strokes) @01:01:55.48 I'm just before the explosive evac @01:01:55.52 Handoff.select :waste @01:02:11.98 delay 1:00 @01:03:12.03 Handoff.select :blocked @01:03:38.29 Handoff.select :waste @01:03:38.45 PSI at @1.68psi at evacEnd @01:03:38.48 Air.reconfigure :default @01:03:38.60 Air.seek :fVent @01:03:40.09 delay 5 seconds @01:03:45.12 Seawater evacuated, Presure above/below filter released. Lysis begins @01:03:45.24 Lysis1.reconfigure :slow @01:03:45.35 Lysis1.seek 1050ul @01:04:15.43 delay 5 seconds @01:04:20.45 Handoff.select :blocked @01:04:20.69 Lysis1.seek 450ul @01:05:20.72 delay 3 seconds @01:05:23.83 Air.reconfigure to mix into 1.37806 parts Lysis1 @01:05:24.58 Air.seek :evac @01:05:24.71 Lysis1.seek 300ul @01:05:39.85 Air.reconfigure :default @01:05:39.96 Air.seek :full @01:05:54.26 Lysis1.seek :empty @01:06:24.44 Lysis Delivered. Syringe pressure @29.6psi @01:06:24.54 PuckHeater.seek 84.7C @01:07:22.77 PuckHeater.hold 15:00,84.7C @01:22:20.42 Lysis complete. Syringe pressure @23.5psi @01:22:20.44 Handoff.select :blocked @01:22:20.60 Lysis1.reconfigure :halfSpeed @01:22:20.72 Lysis1.seek 200ul @01:22:24.53 delay 1 second @01:22:25.59 Lysis1.seek :empty @01:22:29.47 Initial AirS pressure @23.8psi @01:22:29.59 Lysis1.reconfigure :extract @01:22:29.69 Lysis1.seek 875ul,10:00 @01:22:31.05 Air pumping 10 strokes to reach 21psi @01:22:31.07 Air stroke #1 of 10 @01:22:31.11 Air.reconfigure :pressurize @01:22:31.25 Air.seek :pressurized @01:22:44.16 10.4psi after pressurize @01:22:44.19 Air.reconfigure :compress @01:22:44.30 Air.seek :evac @01:22:47.05 16.9psi after compress @01:23:02.25 15.5psi after compress (stable) @01:23:02.27 Air.reconfigure :gulp @01:23:02.41 Air.seek :tVent @01:23:12.37 15.6psi after gulp @01:23:12.39 Air stroke #2 of 10 @01:23:12.45 Air.reconfigure :pressurize @01:23:12.56 Air.seek :pressurized @01:23:25.46 15.0psi after pressurize @01:23:25.48 Air.reconfigure :compress @01:23:25.63 Air.seek :evac @01:23:28.36 17.3psi after compress @01:23:43.09 15.9psi after compress (stable) @01:23:43.12 Air.reconfigure :gulp @01:23:43.25 Air.seek :tVent @01:23:53.23 15.2psi after gulp @01:23:53.25 Air stroke #3 of 10 @01:23:53.30 Air.reconfigure :pressurize @01:23:53.43 Air.seek :pressurized @01:24:06.34 14.5psi after pressurize @01:24:06.38 Air.reconfigure :compress @01:24:06.50 Air.seek :evac @01:24:09.25 15.5psi after compress @01:24:17.85 Air.reconfigure :default @01:24:17.94 Air.hold @01:24:18.26 Lysis1 at 875ul pressure @15.1psi @01:24:18.29 Lysis1.reconfigure :default @01:24:18.42 Lysis1.seek 900ul @01:24:19.29 Lysis1 at 900ul pressure(finPSI) @11.8psi @01:24:19.31 delay 1 second @01:24:20.49 Lysis1 at 900ul pressure @13.4psi @01:24:20.51 Air.reconfigure :halfSpeed @01:24:20.63 Air.seek :fVent @01:24:22.94 Puck Top Vented. Syringe pressure @16.8psi @01:24:22.96 Handoff.select :waste @01:24:23.14 delay 5 seconds @01:24:28.16 Lysate Recovered in LyS1 @01:24:28.18 Lysis1.reconfigure :DAmix @01:24:28.36 Lysis2.reconfigure :DAmix @01:24:29.06 Lysis1.seek 650ul @01:24:29.16 Lysis2.seek 1450ul @01:25:04.26 delay 5 seconds @01:25:09.29 Handoff.select SPR @01:25:09.46 SPR.command "start 2 14" @01:25:10.64 delay 10 seconds @01:25:20.67 SPR.command "start 1 0" @01:25:24.40 Waiting up to 4:00 for SPR to enter state 1 @01:27:57.47 SPR.command "hold_on" @01:27:59.37 SPR Dilution 1 of 1 -- Running Experiment 1 @01:28:00.00 Lysis1.seek 350ul @01:28:00.05 Lysis2.seek 1150ul @01:28:42.19 volL1 = 300.0 and volL2 = 300.0 @01:28:42.21 delay 15 seconds @01:28:57.25 SPR.command "hold_off" @01:29:00.98 Waiting up to 25:00 for SPR to enter state 7 @01:49:14.34 SPR Analysis has Completed @01:49:14.36 Handoff.select :waste @01:49:15.26 Ended log /var/log/esp/spr19jul1600h.spr @01:49:15.30 SPR.command "stats_off" @01:49:16.32 Handoff.select :close @01:49:16.51
Gate.power :heat,:OFF @01:49:16.53 Gate.power :cartridge,:OFF @01:49:16.66 Carousel.seek 25 @01:49:16.93 Plunge.seek :locked @01:49:17.79 PinPort.seek :clear @01:49:22.47 Archive.seek :clear @01:49:22.68 Air.reconfigure :default @01:49:22.88 Lysis1.reconfigure :default @01:49:23.05 Lysis1.seek :clear @01:49:23.14 Air.seek :clear @01:49:23.28 Lysis2.reconfigure :default @01:49:23.39 Lysis2.seek :clear @01:49:40.34
Archive.coast @01:49:40.43 Air.coast @01:49:40.51 Lysis1.coast @01:49:40.59 Lysis2.coast @01:49:40.65 Plunge.coast @01:49:40.74 SamplePump.coast @01:49:40.82 Toroid.coast @01:49:40.90 Carousel.coast @01:49:40.98 PinPort.coast @01:49:41.22 Gate.power :motor,:OFF @01:49:41.24 Gate.power :core,:OFF @01:49:41.28 Gate.power :analytic1,:OFF @01:49:41.33 Gate.power :analytic2,:OFF @01:49:41.36 Gate.power :analytic3,:OFF @01:49:41.39 Gate.power :main,:OFF @01:49:41.43 Safely stopped and ready to power off @01:49:41.77 delay 30 seconds @01:50:11.90 Gate.power :main,:ON,limit to 5000mA @01:50:11.93 Gate.power :analytic1,:ON,limit to 5000mA @01:50:11.97 Gate.power :analytic2,:ON,limit to 5000mA @01:50:12.00 Gate.power :analytic3,:ON,limit to 5000mA @01:50:12.12 Powering core bus @01:50:14.55 SPR Module 1, FW Rev. B, FPGA Rev. C @01:50:14.70
Archive.configure :default @01:50:14.88 Air.configure :default @01:50:15.05 Lysis1.configure :default @01:50:15.20 Lysis2.configure :default @01:50:15.37 Plunge.configure :default @01:50:15.55 SamplePump.configure :default @01:50:15.73 ExtraPump.configure :default @01:50:15.91 Toroid.configure :default @01:50:16.09 Carousel.configure :default @01:50:16.27 Pressure.configure :default @01:50:16.41 PinPort.configure :default @01:50:16.50 All elf controllers running firmware version 4.58 @01:50:16.53 Gate.power :motor,:ON,limit to 5000mA @01:50:16.73 Archive.reconfigure :default @01:50:17.37 Archive.home.jog 0 @01:50:17.66 PinPort.reconfigure :default @01:50:17.70 Toroid.reconfigure :default @01:50:17.75 Plunge.reconfigure :default @01:50:17.80 Lysis1.reconfigure :default @01:50:17.89 Air.reconfigure :default @01:50:17.98 Lysis2.reconfigure :default @01:50:18.38 Lysis1.home.jog 0 @01:50:18.46 Lysis2.home.jog 0 @01:50:18.54 Toroid.home.jog 0 @01:50:18.64 Air.home.jog 0 @01:50:18.74 PinPort.home.jog 0 @01:50:18.84 Plunge.home.jog 0 @01:50:19.25 Archive.reconfigure :homing @01:50:19.58 Archive.jog 1353 @01:50:19.86 PinPort.reconfigure :homing @01:50:19.91 Toroid.reconfigure :homing @01:50:19.97 Lysis2.reconfigure :homing @01:50:20.02 Air.reconfigure :homing @01:50:20.11 Lysis1.reconfigure :homing @01:50:20.16 Plunge.reconfigure :homing @01:50:20.52 Plunge.jog 1552 @01:50:20.62 Toroid.jog 615 @01:50:20.70 Lysis2.jog 166 @01:50:20.82 PinPort.jog -109 @01:50:20.91 Air.jog 1414 @01:50:21.01 Lysis1.jog 1406 @01:50:21.15 PinPort.setRawPosition! 0 @01:50:21.19 Archive.setRawPosition! 50 @01:50:21.29 PinPort.seek :home @01:50:21.37 Archive.seek :home @01:50:21.58 PinPort.reconfigure :default @01:50:21.60 Lysis2.setRawPosition! 50 @01:50:21.79 Lysis2.seek :home @01:50:21.92 Archive.reconfigure :default @01:50:21.97 Plunge.setRawPosition! 50 @01:50:22.16 Plunge.seek :home @01:50:22.32 Lysis2.reconfigure :default @01:50:22.35 Lysis1.setRawPosition! 50 @01:50:22.41 Air.setRawPosition! 50 @01:50:22.59 Lysis1.seek :home @01:50:22.64 Air.seek :home @01:50:22.90 Plunge.reconfigure :default @01:50:22.93 Toroid.setRawPosition! 0 @01:50:23.11 Toroid.seek :home @01:50:23.29 Lysis1.reconfigure :default @01:50:23.33 Air.reconfigure :default @01:50:23.41 Toroid.reconfigure :default @01:50:23.93
Toroid.seek :clear @01:50:25.59 Carousel.reconfigure :default @01:50:25.69 Carousel.home.jog 0 @01:50:26.24 Carousel.seek 25 @01:50:26.43 Selecting Cartridge 24 @01:50:26.79 Carousel.seek 24 @01:50:27.36 Lysis1.seek :locked @01:50:31.58 Plunge.seek :locked @01:50:31.78 Air.seek :locked @01:50:35.96
Powering cartridge bus @01:50:38.11 Gate.setIR 1750,5000,0,6 @01:50:38.24 Gate.setIR 0,5000,0,6 @01:50:38.33 Loaded Lyse-n-Go Cartridge @01:50:38.34 PuckHeater.configure HeatConfig @01:50:38.43 Gate.power :heat,:ON,limit to 5000mA @01:50:39.28 Duration of filtering limited to 2:05:00 @01:50:39.64 Priming sample loop w/100ml, bypass w/10ml @01:50:39.66 SamplePump.setPosition! 0ml @01:50:39.75 Bypass.open @01:50:41.28 Intake.open @01:50:41.60 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @01:50:44.64 Vacuum tare is 51% of full scale @01:50:44.84 Pressure.reconfigure :default @01:50:44.94 Pressure.hold @01:50:45.21 SamplePump.reconfigure :prime @01:50:45.31 SamplePump.seek 10ml,1:10 @01:50:54.30 Pressure.coast @01:50:54.39 SamplePump.setPosition! 0ml @01:50:54.47 Exhaust.open @01:50:55.91 Bypass.close @01:50:57.53 Pressure.reconfigure :default @01:50:57.64 Pressure.hold @01:50:57.96 SamplePump.reconfigure :prime @01:50:58.07 SamplePump.seek 100ml,7:10 @01:52:44.96 Pressure.coast @01:52:45.06 Bypass.open @01:52:45.81 Intake.close @01:52:46.73 Toroid.reconfigure :hold @01:52:46.83 Toroid.seek :crack @01:52:47.68 Toroid.reconfigure :default @01:52:47.78 Toroid.seek :clear @01:52:49.41 Toroid.reconfigure :hold @01:52:49.51 Toroid.seek :cartridge @01:52:51.37 Toroid.reconfigure :default @01:52:51.47 Toroid.seek :clear @01:52:53.54 Pressurizing cartridge to 14psi above 14.7psia @01:52:53.57 SamplePump.setPosition! 0ml @01:52:53.65 Intake.open @01:52:53.90 Bypass.close @01:52:54.64 Exhaust.close @01:52:55.50 Pressure.reconfigure :default @01:52:55.60 Pressure.hold @01:52:55.86 SamplePump.reconfigure :charge @01:52:55.99 SamplePump.seek 2.3ml,41 seconds @01:53:10.62 Pressure.coast @01:53:10.70 Intake.close @01:53:11.57 Pressurized cartridge with 1.001ml to 14.2psi @01:53:11.60 Isolated @30.7psia (16.0psi) @01:53:11.63 Checking for cartridge leaks from 30.7psia @01:53:11.68 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @01:53:17.10 Cartridge pressure rose 1% to 30.9psia @01:53:17.22 Sampling 1000.0ml @01:53:17.24 SamplePump.setPosition! 0ml @01:53:17.34 Exhaust.open @01:53:18.07 Intake.open @01:53:18.48 Pressure.reconfigure :default @01:53:18.56 Pressure.hold @01:53:18.75 Sea 1.8m deep (17.4psia) @01:53:18.95 SamplePump.reconfigure :sample @01:53:19.06 SamplePump.seek 1000ml,1:07:09 @01:53:21.56 Cartridge 24 sampling 1/1000ml at 0.47ml/s with 15.8psi vacuum @01:54:21.56 Cartridge 24 sampling 28/1000ml at 0.45ml/s with 12.6psi vacuum 2.4m deep (18.2psia) @01:55:21.55 Cartridge 24 sampling 54/1000ml at 0.44ml/s with 14.9psi vacuum @01:56:21.56 Cartridge 24 sampling 80/1000ml at 0.42ml/s with 11.5psi vacuum 3.0m deep (19.2psia) @01:57:21.57 Cartridge 24 sampling 105/1000ml at 0.45ml/s with 12.5psi vacuum 3.6m deep (20.1psia) @01:58:21.55 Cartridge 24 sampling 131/1000ml at 0.43ml/s with 8.6psi vacuum 4.3m deep (21.0psia) @01:59:21.56 Cartridge 24 sampling 156/1000ml at 0.43ml/s with 12.9psi vacuum 2.0m deep (17.6psia) @02:00:21.56 Cartridge 24 sampling 181/1000ml at 0.41ml/s with 11.1psi vacuum 2.7m deep (18.7psia) @02:01:21.56 Cartridge 24 sampling 206/1000ml at 0.42ml/s with 13.0psi vacuum 1.9m deep (17.5psia) @02:02:21.56 Cartridge 24 sampling 232/1000ml at 0.44ml/s with 15.4psi vacuum @02:03:21.58 Cartridge 24 sampling 257/1000ml at 0.43ml/s with 12.7psi vacuum 2.4m deep (18.2psia) @02:04:21.57 Cartridge 24 sampling 282/1000ml at 0.42ml/s with 13.2psi vacuum @02:05:21.56 Cartridge 24 sampling 307/1000ml at 0.42ml/s with 16.0psi vacuum @02:06:21.56 Cartridge 24 sampling 332/1000ml at 0.38ml/s with 14.7psi vacuum @02:07:21.56 Cartridge 24 sampling 356/1000ml at 0.40ml/s with 13.1psi vacuum @02:08:21.56 Cartridge 24 sampling 380/1000ml at 0.39ml/s with 15.3psi vacuum @02:09:21.56 Cartridge 24 sampling 403/1000ml at 0.37ml/s with 15.3psi vacuum @02:10:21.55 Cartridge 24 sampling 426/1000ml at 0.40ml/s with 14.0psi vacuum 2.3m deep (18.1psia) @02:11:21.55 Cartridge 24 sampling 449/1000ml at 0.35ml/s with 15.2psi vacuum @02:12:21.56 Cartridge 24 sampling 472/1000ml at 0.38ml/s with 13.4psi vacuum 1.9m deep (17.4psia) @02:13:21.57 Cartridge 24 sampling 494/1000ml at 0.33ml/s with 13.4psi vacuum @02:14:21.55 Cartridge 24 sampling 516/1000ml at 0.38ml/s with 9.4psi vacuum 5.4m deep (22.6psia) @02:15:21.57 Cartridge 24 sampling 537/1000ml at 0.35ml/s with 11.4psi vacuum 2.8m deep (18.8psia) @02:16:21.56 Cartridge 24 sampling 559/1000ml at 0.36ml/s with 10.4psi vacuum 3.2m deep (19.4psia) @02:17:21.56 Cartridge 24 sampling 579/1000ml at 0.33ml/s with 15.8psi vacuum @02:18:21.58 Cartridge 24 sampling 600/1000ml at 0.35ml/s with 13.2psi vacuum 2.0m deep (17.6psia) @02:19:21.56 Cartridge 24 sampling 621/1000ml at 0.33ml/s with 14.0psi vacuum 1.7m deep (17.2psia) @02:20:21.56 Cartridge 24 sampling 641/1000ml at 0.33ml/s with 11.6psi vacuum 2.8m deep (18.8psia) @02:21:21.56 Cartridge 24 sampling 660/1000ml at 0.32ml/s with 15.3psi vacuum @02:22:21.56 Cartridge 24 sampling 680/1000ml at 0.33ml/s with 13.2psi vacuum 2.4m deep (18.3psia) @02:23:21.56 Cartridge 24 sampling 698/1000ml at 0.31ml/s with 15.6psi vacuum @02:24:21.56 Cartridge 24 sampling 717/1000ml at 0.32ml/s with 10.1psi vacuum 4.5m deep (21.3psia) @02:25:21.57 Cartridge 24 sampling 735/1000ml at 0.30ml/s with 14.9psi vacuum 2.0m deep (17.7psia) @02:26:21.55 Cartridge 24 sampling 753/1000ml at 0.30ml/s with 13.7psi vacuum 2.2m deep (17.9psia) @02:27:21.54 Cartridge 24 sampling 771/1000ml at 0.30ml/s with 8.9psi vacuum 5.0m deep (22.1psia) @02:28:21.56 Cartridge 24 sampling 788/1000ml at 0.26ml/s with 7.8psi vacuum 3.9m deep (20.4psia) @02:29:21.56 Cartridge 24 sampling 805/1000ml at 0.28ml/s with 15.2psi vacuum @02:30:21.56 Cartridge 24 sampling 822/1000ml at 0.28ml/s with 11.0psi vacuum 2.4m deep (18.2psia) @02:31:21.57 Cartridge 24 sampling 839/1000ml at 0.29ml/s with 12.8psi vacuum 2.4m deep (18.3psia) @02:32:21.55 Cartridge 24 sampling 856/1000ml at 0.28ml/s with 12.4psi vacuum 2.3m deep (18.1psia) @02:33:21.56 Cartridge 24 sampling 872/1000ml at 0.28ml/s with 13.8psi vacuum 2.4m deep (18.3psia) @02:34:21.55 Cartridge 24 sampling 888/1000ml at 0.25ml/s with 10.9psi vacuum 1.7m deep (17.2psia) @02:35:21.57 Cartridge 24 sampling 905/1000ml at 0.26ml/s with 10.4psi vacuum 3.2m deep (19.4psia) @02:36:21.56 Cartridge 24 sampling 921/1000ml at 0.27ml/s with 12.1psi vacuum 2.4m deep (18.2psia) @02:37:21.55 Cartridge 24 sampling 937/1000ml at 0.29ml/s with 10.2psi vacuum 2.4m deep (18.2psia) @02:38:21.57 Cartridge 24 sampling 953/1000ml at 0.27ml/s with 9.2psi vacuum 3.1m deep (19.3psia) @02:39:21.57 Cartridge 24 sampling 969/1000ml at 0.26ml/s with 11.4psi vacuum 2.5m deep (18.4psia) @02:40:21.56 Cartridge 24 sampling 985/1000ml at 0.28ml/s with 12.7psi vacuum 3.0m deep (19.1psia) @02:41:18.81 Pressure.coast @02:41:19.00 Intake.close @02:41:19.08 Exhaust.close @02:41:19.31 Toroid.reconfigure :hold @02:41:19.41 Toroid.seek :bypass @02:41:21.07 Toroid.reconfigure :default @02:41:21.17 Toroid.seek :clear @02:41:22.83 Sampled 1000.0ml @02:41:24.91 SPR.command "read_sequences" @02:41:25.43 SPR.command "stats_on" @02:41:25.50 SPR.command "start 0 1" @02:41:27.51 Begun log /var/log/esp/spr19jul1602h.spr @02:41:28.28 Handoff.select :waste @02:41:28.54 Archive.seek :empty @02:41:36.62 Syringe tare is 19% of full scale @02:41:46.29 PinPort.seek :cartridge @02:41:50.88 Lysis1.seek 1350ul @02:41:53.42 Lysis2.seek 1700ul @02:41:56.57 Plunge.seek :reagent @02:41:57.45 Evacuating puck with filter bubble point of 30psi @02:41:57.47 PinPort.seek :cartridge @02:41:57.62 Handoff.select :waste @02:42:05.34 Air pumping 1 strokes to reach 4psi @02:42:05.36 Air.reconfigure :gulp @02:42:05.49 Air.seek :tVent @02:42:07.36 0.0psi after gulp @02:42:07.37 Air stroke #1 of 1 @02:42:07.43 Air.reconfigure :pressurize @02:42:07.55 Air.seek :pressurized @02:42:20.44 0.0psi after pressurize @02:42:20.46 Air.reconfigure :compress @02:42:20.59 Air.seek :evac @02:42:23.32 1.4psi after compress @02:42:37.93 0.2psi after compress (stable) @02:42:38.13 at 0.1psi Opened to waste @02:42:38.14 Handoff.select :blocked @02:42:38.39 Air pumping 10 strokes to reach 30psi @02:42:38.42 Air.reconfigure :gulp @02:42:38.55 Air.seek :tVent @02:42:48.49 3.4psi after gulp @02:42:48.51 Air stroke #1 of 10 @02:42:48.55 Air.reconfigure :pressurize @02:42:48.67 Air.seek :pressurized @02:43:01.59 4.1psi after pressurize @02:43:01.62 Air.reconfigure :compress @02:43:01.74 Air.seek :evac @02:43:04.49 5.4psi after compress @02:43:34.86 12.1psi after compress (stable) @02:43:34.90 Air.reconfigure :gulp @02:43:35.01 Air.seek :tVent @02:43:44.97 12.9psi after gulp @02:43:44.99 Air stroke #2 of 10 @02:43:45.03 Air.reconfigure :pressurize @02:43:45.16 Air.seek :pressurized @02:43:58.05 12.7psi after pressurize @02:43:58.08 Air.reconfigure :compress @02:43:58.20 Air.seek :evac @02:44:00.94 15.2psi after compress @02:44:24.86 27.3psi after compress (stable) @02:44:24.89 Air.reconfigure :gulp @02:44:25.00 Air.seek :tVent @02:44:34.94 28.4psi after gulp @02:44:34.96 Air stroke #3 of 10 @02:44:35.02 Air.reconfigure :pressurize @02:44:35.15 Air.seek :pressurized @02:44:48.03 27.7psi after pressurize @02:44:48.06 Air.reconfigure :compress @02:44:48.18 Air.seek :evac @02:44:50.91 28.5psi after compress @02:44:51.66 Reached 30.2 of 30.0psi after pumping 6230ul (4.00 strokes) @02:44:51.68 Handoff.select :waste @02:45:05.85 delay 1:00 @02:46:05.89 Handoff.select :blocked @02:46:32.37 Handoff.select :waste @02:46:32.54 PSI at @0.67psi at evacEnd @02:46:32.56 Handoff.select :blocked @02:46:32.72 Air.reconfigure :gulp @02:46:32.82 Air.seek :tVent @02:46:50.32 Stable @0.6psi after Handoff blocked @02:46:50.48 Air pumping 10 strokes to reach 26psi @02:46:50.49 Air stroke #1 of 10 @02:46:50.52 Air.reconfigure :pressurize @02:46:50.67 Air.seek :pressurized @02:47:03.54 0.8psi after pressurize @02:47:03.57 Air.reconfigure :compress @02:47:03.72 Air.seek :evac @02:47:06.48 4.4psi after compress @02:47:28.07 11.7psi after compress (stable) @02:47:28.12 Air.reconfigure :gulp @02:47:28.26 Air.seek :tVent @02:47:38.21 12.4psi after gulp @02:47:38.24 Air stroke #2 of 10 @02:47:38.28 Air.reconfigure :pressurize @02:47:38.40 Air.seek :pressurized @02:47:51.85 12.6psi after pressurize @02:47:51.88 Air.reconfigure :compress @02:47:52.02 Air.seek :evac @02:47:54.78 15.6psi after compress @02:48:15.80 22.6psi after compress (stable) @02:48:15.82 Air.reconfigure :gulp @02:48:15.95 Air.seek :tVent @02:48:25.92 23.3psi after gulp @02:48:25.94 Air stroke #3 of 10 @02:48:25.98 Air.reconfigure :pressurize @02:48:26.13 Air.seek :pressurized @02:48:39.02 23.4psi after pressurize @02:48:39.05 Air.reconfigure :compress @02:48:39.20 Air.seek :evac @02:48:41.92 25.2psi after compress @02:48:42.22 Reached 26.0 of 25.6psi after pumping 6230ul (4.00 strokes) @02:48:42.26 I'm just before the explosive evac @02:48:42.29 Handoff.select :waste @02:48:50.63 delay 1:00 @02:49:50.66 Handoff.select :blocked @02:50:17.49 Handoff.select :waste @02:50:17.65 PSI at @0.20psi at evacEnd @02:50:17.69 Air.reconfigure :default @02:50:17.81 Air.seek :fVent @02:50:19.29 delay 5 seconds @02:50:24.32 Seawater evacuated, Presure above/below filter released. Lysis begins @02:50:24.43 Lysis1.reconfigure :slow @02:50:24.54 Lysis1.seek 1050ul @02:50:54.62 delay 5 seconds @02:50:59.64 Handoff.select :blocked @02:50:59.92 Lysis1.seek 450ul @02:51:59.89 delay 3 seconds @02:52:02.99 Air.reconfigure to mix into 1.37806 parts Lysis1 @02:52:03.66 Air.seek :evac @02:52:03.77 Lysis1.seek 300ul @02:52:18.89 Air.reconfigure :default @02:52:19.00 Air.seek :full @02:52:33.24 Lysis1.seek :empty @02:53:03.40 Lysis Delivered. Syringe pressure @37.7psi @02:53:03.48 PuckHeater.seek 84.7C @02:53:39.04 PuckHeater.hold 15:00,84.7C @03:08:33.67 Lysis complete. Syringe pressure @42.7psi @03:08:33.69 Handoff.select :blocked @03:08:33.87 Lysis1.reconfigure :halfSpeed @03:08:33.97 Lysis1.seek 200ul @03:08:37.77 delay 1 second @03:08:38.80 Lysis1.seek :empty @03:08:42.67 Initial AirS pressure @43.5psi @03:08:42.76 Lysis1.reconfigure :extract @03:08:42.93 Lysis1.seek 875ul,10:00 @03:08:44.73 Air pumping 10 strokes to reach 21psi @03:08:44.74 Air stroke #1 of 10 @03:08:44.78 Air.reconfigure :pressurize @03:08:44.91 Air.seek :pressurized @03:08:57.51 Reached 21.6 of 21.0psi after pumping 1381ul (0.89 strokes) @03:08:59.44 Air pumping 9.11330855018587 strokes to reach 21psi @03:08:59.47 Air.reconfigure :gulp @03:08:59.59 Air.seek :tVent @03:09:08.49 15.0psi after gulp @03:09:08.51 Air stroke #1 of 9.11330855018587 @03:09:08.55 Air.reconfigure :pressurize @03:09:08.67 Air.seek :pressurized @03:09:21.60 19.5psi after pressurize @03:09:21.62 Air.reconfigure :compress @03:09:21.74 Air.seek :evac @03:09:24.47 17.3psi after compress @03:09:25.00 Air.reconfigure :default @03:09:25.11 Air.hold @03:09:25.37 Lysis1 at 875ul pressure @18.1psi @03:09:25.40 Lysis1.reconfigure :default @03:09:25.52 Lysis1.seek 900ul @03:09:26.31 Syringe::Overpressure in PROCESSING -- 18.3psi after recovery pull @03:09:26.32 Skipping SPR because lysate volume unknown @03:09:26.36 SPR.command "start 2 14" @03:09:27.66 Handoff.select :waste @03:09:29.04 Ended log /var/log/esp/spr19jul1602h.spr @03:09:29.09 SPR.command "stats_off" @03:09:29.61 Handoff.select :close @03:09:29.80
Gate.power :heat,:OFF @03:09:29.82 Gate.power :cartridge,:OFF @03:09:29.94 Carousel.seek 24 @03:09:30.22 Plunge.seek :locked @03:09:31.09 PinPort.seek :clear @03:09:35.79 Archive.seek :clear @03:09:36.02 Air.seek :clear @03:09:36.23 Lysis1.seek :clear @03:09:36.44 Lysis2.seek :clear @03:09:53.60
Archive.coast @03:09:53.68 Air.coast @03:09:53.76 Lysis1.coast @03:09:53.84 Lysis2.coast @03:09:53.92 Plunge.coast @03:09:54.00 SamplePump.coast @03:09:54.08 Toroid.coast @03:09:54.17 Carousel.coast @03:09:54.25 PinPort.coast @03:09:54.48 Gate.power :motor,:OFF @03:09:54.50 Gate.power :core,:OFF @03:09:54.55 Gate.power :analytic1,:OFF @03:09:54.58 Gate.power :analytic2,:OFF @03:09:54.61 Gate.power :analytic3,:OFF @03:09:54.65 Gate.power :main,:OFF @03:09:54.69 Safely stopped and ready to power off @03:09:55.03 delay 30 seconds @03:10:25.16 Gate.power :main,:ON,limit to 5000mA @03:10:25.19 Gate.power :analytic1,:ON,limit to 5000mA @03:10:25.23 Gate.power :analytic2,:ON,limit to 5000mA @03:10:25.26 Gate.power :analytic3,:ON,limit to 5000mA @03:10:25.35 Powering core bus @03:10:27.75 SPR Module 1, FW Rev. B, FPGA Rev. C @03:10:27.95
Archive.configure :default @03:10:28.13 Air.configure :default @03:10:28.29 Lysis1.configure :default @03:10:28.44 Lysis2.configure :default @03:10:28.63 Plunge.configure :default @03:10:28.80 SamplePump.configure :default @03:10:28.98 ExtraPump.configure :default @03:10:29.16 Toroid.configure :default @03:10:29.34 Carousel.configure :default @03:10:29.50 Pressure.configure :default @03:10:29.66 PinPort.configure :default @03:10:29.75 All elf controllers running firmware version 4.58 @03:10:29.77 Gate.power :motor,:ON,limit to 5000mA @03:10:30.06 Archive.reconfigure :default @03:10:30.48 Archive.home.jog 0 @03:10:30.77 Toroid.reconfigure :default @03:10:30.83 Plunge.reconfigure :default @03:10:30.90 Lysis1.reconfigure :default @03:10:30.97 Air.reconfigure :default @03:10:31.04 PinPort.reconfigure :default @03:10:31.12 Lysis2.reconfigure :default @03:10:31.56 Lysis2.home.jog 0 @03:10:31.65 Plunge.home.jog 0 @03:10:31.75 Air.home.jog 0 @03:10:31.85 PinPort.home.jog 0 @03:10:31.94 Toroid.home.jog 0 @03:10:32.03 Lysis1.home.jog 0 @03:10:32.49 Archive.reconfigure :homing @03:10:32.71 Archive.jog 1353 @03:10:32.96 Toroid.reconfigure :homing @03:10:33.03 Plunge.reconfigure :homing @03:10:33.10 Air.reconfigure :homing @03:10:33.16 Lysis2.reconfigure :homing @03:10:33.22 PinPort.reconfigure :homing @03:10:33.29 Lysis1.reconfigure :homing @03:10:33.66 Lysis1.jog 1407 @03:10:33.75 Toroid.jog 617 @03:10:33.85 Plunge.jog 1556 @03:10:33.94 Lysis2.jog 170 @03:10:34.03 Air.jog 151 @03:10:34.13 PinPort.jog -108 @03:10:34.24 Archive.setRawPosition! 50 @03:10:34.31 Archive.seek :home @03:10:34.49 Lysis2.setRawPosition! 50 @03:10:34.53 PinPort.setRawPosition! 0 @03:10:34.68 Lysis2.seek :home @03:10:34.71 PinPort.seek :home @03:10:34.97 Lysis1.setRawPosition! 50 @03:10:35.01 Air.setRawPosition! 50 @03:10:35.05 PinPort.reconfigure :default @03:10:35.14 Archive.reconfigure :default @03:10:35.37 Lysis1.seek :home @03:10:35.44 Air.seek :home @03:10:35.68 Plunge.setRawPosition! 50 @03:10:36.19 Lysis2.reconfigure :default @03:10:36.44 Plunge.seek :home @03:10:36.67 Toroid.setRawPosition! 0 @03:10:36.69 Lysis1.reconfigure :default @03:10:36.73 Air.reconfigure :default @03:10:36.91 Toroid.seek :home @03:10:37.22 Toroid.reconfigure :default @03:10:37.24 Plunge.reconfigure :default @03:10:37.55
Toroid.seek :clear @03:10:39.22 Carousel.reconfigure :default @03:10:39.32 Carousel.home.jog 0 @03:10:39.87 Carousel.seek 24 @03:10:40.07 Selecting Cartridge 23 @03:10:40.41 Carousel.seek 23 @03:10:40.99 Lysis1.seek :locked @03:10:45.21 Plunge.seek :locked @03:10:45.41 Air.seek :locked @03:10:49.60
Powering cartridge bus @03:10:51.74 Gate.setIR 1750,5000,0,6 @03:10:51.89 Gate.setIR 0,5000,0,6 @03:10:51.98 Loaded Lyse-n-Go Cartridge @03:10:51.99 PuckHeater.configure HeatConfig @03:10:52.07 Gate.power :heat,:ON,limit to 5000mA @03:10:52.43 Duration of filtering limited to 2:05:00 @03:10:52.79 Priming sample loop w/100ml, bypass w/10ml @03:10:52.81 SamplePump.setPosition! 0ml @03:10:52.91 Bypass.open @03:10:54.46 Intake.open @03:10:54.72 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @03:10:57.75 Vacuum tare is 51% of full scale @03:10:57.95 Pressure.reconfigure :default @03:10:58.04 Pressure.hold @03:10:58.31 SamplePump.reconfigure :prime @03:10:58.43 SamplePump.seek 10ml,1:10 @03:11:07.41 Pressure.coast @03:11:07.50 SamplePump.setPosition! 0ml @03:11:07.58 Exhaust.open @03:11:09.02 Bypass.close @03:11:10.69 Pressure.reconfigure :default @03:11:10.78 Pressure.hold @03:11:11.13 SamplePump.reconfigure :prime @03:11:11.24 SamplePump.seek 100ml,7:10 @03:12:58.00 Pressure.coast @03:12:58.10 Bypass.open @03:12:58.85 Intake.close @03:12:59.73 Toroid.reconfigure :hold @03:12:59.83 Toroid.seek :crack @03:13:00.67 Toroid.reconfigure :default @03:13:00.77 Toroid.seek :clear @03:13:02.39 Toroid.reconfigure :hold @03:13:02.49 Toroid.seek :cartridge @03:13:04.34 Toroid.reconfigure :default @03:13:04.44 Toroid.seek :clear @03:13:06.50 Pressurizing cartridge to 14psi above 14.6psia @03:13:06.52 SamplePump.setPosition! 0ml @03:13:06.62 Intake.open @03:13:06.90 Bypass.close @03:13:07.66 Exhaust.close @03:13:08.53 Pressure.hold @03:13:08.80 SamplePump.reconfigure :charge @03:13:08.92 SamplePump.seek 2.3ml,41 seconds @03:13:22.50 Pressure.coast @03:13:23.10 Intake.close @03:13:24.01 Pressurized cartridge with 0.863ml to 14.1psi @03:13:24.03 Isolated @30.3psia (15.6psi) @03:13:24.06 Checking for cartridge leaks from 30.3psia @03:13:24.13 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @03:13:29.44 Cartridge pressure rose 1% to 30.5psia @03:13:29.57 Sampling 1000.0ml @03:13:29.59 SamplePump.setPosition! 0ml @03:13:29.68 Exhaust.open @03:13:30.41 Intake.open @03:13:31.33 Pressure.reconfigure :default @03:13:31.42 Pressure.hold @03:13:31.78 SamplePump.reconfigure :sample @03:13:31.89 SamplePump.seek 1000ml,1:07:09 @03:13:34.39 Cartridge 23 sampling 1/1000ml at 0.45ml/s with 16.2psi vacuum @03:14:34.41 Cartridge 23 sampling 27/1000ml at 0.44ml/s with 12.6psi vacuum @03:15:34.40 Cartridge 23 sampling 52/1000ml at 0.42ml/s with 12.8psi vacuum @03:16:34.41 Cartridge 23 sampling 78/1000ml at 0.41ml/s with 14.4psi vacuum @03:17:34.40 Cartridge 23 sampling 102/1000ml at 0.42ml/s with 13.3psi vacuum 1.9m deep (17.5psia) @03:18:34.41 Cartridge 23 sampling 127/1000ml at 0.41ml/s with 13.7psi vacuum @03:19:34.40 Cartridge 23 sampling 151/1000ml at 0.41ml/s with 12.2psi vacuum 2.1m deep (17.9psia) @03:20:34.41 Cartridge 23 sampling 175/1000ml at 0.40ml/s with 11.9psi vacuum 3.4m deep (19.7psia) @03:21:34.41 Cartridge 23 sampling 199/1000ml at 0.39ml/s with 14.4psi vacuum @03:22:34.40 Cartridge 23 sampling 222/1000ml at 0.38ml/s with 9.7psi vacuum 4.4m deep (21.2psia) @03:23:34.41 Cartridge 23 sampling 246/1000ml at 0.39ml/s with 13.7psi vacuum 1.6m deep (17.1psia) @03:24:34.41 Cartridge 23 sampling 269/1000ml at 0.38ml/s with 13.2psi vacuum @03:25:34.42 Cartridge 23 sampling 292/1000ml at 0.38ml/s with 13.0psi vacuum @03:26:34.42 Cartridge 23 sampling 315/1000ml at 0.38ml/s with 16.1psi vacuum @03:27:34.39 Cartridge 23 sampling 338/1000ml at 0.36ml/s with 14.7psi vacuum @03:28:34.41 Cartridge 23 sampling 360/1000ml at 0.38ml/s with 16.2psi vacuum @03:29:34.41 Cartridge 23 sampling 382/1000ml at 0.37ml/s with 13.1psi vacuum 2.4m deep (18.2psia) @03:30:34.42 Cartridge 23 sampling 404/1000ml at 0.35ml/s with 13.5psi vacuum @03:31:34.41 Cartridge 23 sampling 425/1000ml at 0.37ml/s with 12.8psi vacuum @03:32:34.40 Cartridge 23 sampling 446/1000ml at 0.37ml/s with 13.7psi vacuum @03:33:34.41 Cartridge 23 sampling 467/1000ml at 0.35ml/s with 12.9psi vacuum @03:34:34.42 Cartridge 23 sampling 487/1000ml at 0.34ml/s with 14.9psi vacuum @03:35:34.41 Cartridge 23 sampling 507/1000ml at 0.34ml/s with 15.1psi vacuum @03:36:34.42 Cartridge 23 sampling 527/1000ml at 0.33ml/s with 11.8psi vacuum 2.7m deep (18.7psia) @03:37:34.41 Cartridge 23 sampling 546/1000ml at 0.33ml/s with 12.9psi vacuum 2.5m deep (18.3psia) @03:38:34.41 Cartridge 23 sampling 565/1000ml at 0.33ml/s with 9.2psi vacuum 5.1m deep (22.2psia) @03:39:34.40 Cartridge 23 sampling 584/1000ml at 0.31ml/s with 12.8psi vacuum @03:40:34.41 Cartridge 23 sampling 603/1000ml at 0.29ml/s with 14.7psi vacuum @03:41:34.41 Cartridge 23 sampling 622/1000ml at 0.31ml/s with 6.3psi vacuum 5.8m deep (23.3psia) @03:42:34.42 Cartridge 23 sampling 641/1000ml at 0.31ml/s with 15.1psi vacuum @03:43:34.41 Cartridge 23 sampling 660/1000ml at 0.32ml/s with 13.1psi vacuum 2.4m deep (18.3psia) @03:44:34.40 Cartridge 23 sampling 678/1000ml at 0.32ml/s with 13.1psi vacuum 1.8m deep (17.4psia) @03:45:34.40 Cartridge 23 sampling 697/1000ml at 0.32ml/s with 13.5psi vacuum 2.3m deep (18.0psia) @03:46:34.41 Cartridge 23 sampling 715/1000ml at 0.32ml/s with 15.0psi vacuum 2.0m deep (17.7psia) @03:47:34.40 Cartridge 23 sampling 733/1000ml at 0.26ml/s with 7.2psi vacuum 4.2m deep (20.9psia) @03:48:34.41 Cartridge 23 sampling 750/1000ml at 0.29ml/s with 13.4psi vacuum @03:49:34.41 Cartridge 23 sampling 767/1000ml at 0.29ml/s with 13.4psi vacuum 2.5m deep (18.3psia) @03:50:34.41 Cartridge 23 sampling 784/1000ml at 0.27ml/s with 16.0psi vacuum @03:51:34.42 Cartridge 23 sampling 801/1000ml at 0.28ml/s with 7.9psi vacuum 5.2m deep (22.4psia) @03:52:34.41 Cartridge 23 sampling 818/1000ml at 0.29ml/s with 11.6psi vacuum 2.9m deep (19.0psia) @03:53:34.42 Cartridge 23 sampling 834/1000ml at 0.25ml/s with 15.5psi vacuum @03:54:34.42 Cartridge 23 sampling 850/1000ml at 0.26ml/s with 15.0psi vacuum 1.7m deep (17.2psia) @03:55:34.41 Cartridge 23 sampling 866/1000ml at 0.25ml/s with 15.9psi vacuum @03:56:34.47 Cartridge 23 sampling 882/1000ml at 0.27ml/s with 13.3psi vacuum 2.3m deep (18.1psia) @03:57:34.42 Cartridge 23 sampling 898/1000ml at 0.25ml/s with 12.4psi vacuum @03:58:34.95 Cartridge 23 sampling 914/1000ml at 0.27ml/s with 12.6psi vacuum 3.0m deep (19.1psia) @03:59:34.42 Cartridge 23 sampling 929/1000ml at 0.25ml/s with 15.3psi vacuum 2.0m deep (17.6psia) @04:00:34.43 Cartridge 23 sampling 945/1000ml at 0.27ml/s with 15.1psi vacuum 2.2m deep (18.0psia) @04:01:34.42 Cartridge 23 sampling 960/1000ml at 0.25ml/s with 16.0psi vacuum 1.9m deep (17.5psia) @04:02:34.40 Cartridge 23 sampling 976/1000ml at 0.25ml/s with 16.0psi vacuum 1.8m deep (17.4psia) @04:03:34.41 Cartridge 23 sampling 991/1000ml at 0.25ml/s with 15.1psi vacuum 2.4m deep (18.2psia) @04:04:08.56 Pressure.coast @04:04:08.76 Intake.close @04:04:08.84 Exhaust.close @04:04:09.09 Toroid.reconfigure :hold @04:04:09.21 Toroid.seek :bypass @04:04:10.86 Toroid.reconfigure :default @04:04:10.98 Toroid.seek :clear @04:04:12.64 Sampled 1000.0ml @04:04:14.72 SPR.command "read_sequences" @04:04:14.79 SPR.command "stats_on" @04:04:14.85 SPR.command "start 0 1" @04:04:16.86 Begun log /var/log/esp/spr19jul1604h.spr @04:04:17.89 AnalyticModule::ReadTimeout in PROCESSING -- No response from SPR on AMspr (try 1 of 3) @04:04:20.02 Handoff.select :waste @04:04:20.21 Archive.seek :empty @04:04:27.89 Syringe tare is 19% of full scale @04:04:38.02 PinPort.seek :cartridge @04:04:42.62 Lysis1.seek 1350ul @04:04:45.16 Lysis2.seek 1700ul @04:04:48.30 Plunge.seek :reagent @04:04:49.21 Evacuating puck with filter bubble point of 30psi @04:04:49.24 PinPort.seek :cartridge @04:04:49.41 Handoff.select :waste @04:04:57.13 Air pumping 1 strokes to reach 4psi @04:04:57.16 Air.reconfigure :gulp @04:04:57.29 Air.seek :tVent @04:04:59.13 0.3psi after gulp @04:04:59.15 Air stroke #1 of 1 @04:04:59.19 Air.reconfigure :pressurize @04:04:59.31 Air.seek :pressurized @04:05:12.22 0.3psi after pressurize @04:05:12.25 Air.reconfigure :compress @04:05:12.37 Air.seek :evac @04:05:15.10 1.1psi after compress @04:05:29.74 -0.1psi after compress (stable) @04:05:29.94 at -0.1psi Opened to waste @04:05:29.96 Handoff.select :blocked @04:05:30.21 Air pumping 10 strokes to reach 30psi @04:05:30.25 Air.reconfigure :gulp @04:05:30.92 Air.seek :tVent @04:05:40.91 7.3psi after gulp @04:05:40.92 Air stroke #1 of 10 @04:05:40.98 Air.reconfigure :pressurize @04:05:41.09 Air.seek :pressurized @04:05:53.99 7.6psi after pressurize @04:05:54.02 Air.reconfigure :compress @04:05:54.15 Air.seek :evac @04:05:56.88 11.8psi after compress @04:06:19.65 23.9psi after compress (stable) @04:06:19.68 Air.reconfigure :gulp @04:06:19.81 Air.seek :tVent @04:06:29.78 24.4psi after gulp @04:06:29.80 Air stroke #2 of 10 @04:06:29.85 Air.reconfigure :pressurize @04:06:29.98 Air.seek :pressurized @04:06:42.92 22.9psi after pressurize @04:06:42.95 Air.reconfigure :compress @04:06:43.08 Air.seek :evac @04:06:45.80 27.0psi after compress @04:06:46.79 Reached 30.5 of 30.0psi after pumping 4672ul (3.00 strokes) @04:06:46.81 Handoff.select :waste @04:07:07.31 delay 1:00 @04:08:07.34 Handoff.select :blocked @04:08:34.20 Handoff.select :waste @04:08:34.36 PSI at @0.95psi at evacEnd @04:08:34.38 Handoff.select :blocked @04:08:34.55 Air.reconfigure :gulp @04:08:34.65 Air.seek :tVent @04:08:52.14 Stable @0.9psi after Handoff blocked @04:08:52.28 Air pumping 10 strokes to reach 26psi @04:08:52.29 Air stroke #1 of 10 @04:08:52.34 Air.reconfigure :pressurize @04:08:52.49 Air.seek :pressurized @04:09:05.39 1.2psi after pressurize @04:09:05.42 Air.reconfigure :compress @04:09:05.54 Air.seek :evac @04:09:08.31 3.4psi after compress @04:09:31.08 11.6psi after compress (stable) @04:09:31.11 Air.reconfigure :gulp @04:09:31.24 Air.seek :tVent @04:09:41.20 12.4psi after gulp @04:09:41.22 Air stroke #2 of 10 @04:09:41.27 Air.reconfigure :pressurize @04:09:41.40 Air.seek :pressurized @04:09:54.33 12.6psi after pressurize @04:09:54.35 Air.reconfigure :compress @04:09:54.48 Air.seek :evac @04:09:57.24 14.7psi after compress @04:10:19.48 22.0psi after compress (stable) @04:10:19.51 Air.reconfigure :gulp @04:10:19.64 Air.seek :tVent @04:10:29.61 22.8psi after gulp @04:10:29.62 Air stroke #3 of 10 @04:10:29.68 Air.reconfigure :pressurize @04:10:29.80 Air.seek :pressurized @04:10:42.74 22.8psi after pressurize @04:10:42.76 Air.reconfigure :compress @04:10:42.90 Air.seek :evac @04:10:45.62 24.2psi after compress @04:10:46.61 Reached 26.1 of 25.9psi after pumping 6230ul (4.00 strokes) @04:10:46.62 I'm just before the explosive evac @04:10:46.64 Handoff.select :waste @04:10:55.05 delay 1:00 @04:11:55.07 Handoff.select :blocked @04:12:21.92 Handoff.select :waste @04:12:22.07 PSI at @0.39psi at evacEnd @04:12:22.11 Air.reconfigure :default @04:12:22.23 Air.seek :fVent @04:12:23.71 delay 5 seconds @04:12:28.74 Seawater evacuated, Presure above/below filter released. Lysis begins @04:12:28.86 Lysis1.reconfigure :slow @04:12:28.99 Lysis1.seek 1050ul @04:12:59.06 delay 5 seconds @04:13:04.10 Handoff.select :blocked @04:13:04.33 Lysis1.seek 450ul @04:14:04.34 delay 3 seconds @04:14:07.47 Air.reconfigure to mix into 1.37806 parts Lysis1 @04:14:08.11 Air.seek :evac @04:14:08.16 Lysis1.seek 300ul @04:14:23.41 Air.reconfigure :default @04:14:23.54 Air.seek :full @04:14:37.79 Lysis1.seek :empty @04:15:07.98 Lysis Delivered. Syringe pressure @61.8psi @04:15:08.06 PuckHeater.seek 84.7C @04:15:08.27 SPR.command "start 2 14" @04:15:09.29 Handoff.select :waste @04:15:09.77 Ended log /var/log/esp/spr19jul1604h.spr @04:15:09.79 SPR.command "stats_off" @04:15:10.73 I2C::NodeOffline in PROCESSING -- Cartridge Not Responding while reading Puck Heater's status @04:15:10.77 Thread::ChildDied in MAIN -- :PROCESSING @04:15:10.93 Handoff.select :close @04:15:11.05 Thread::ChildDied in MAIN_scheduler -- :MAIN @04:15:11.17 Session Ended